Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3222 and HP15_3223 are separated by 2 nucleotides HP15_3223 and HP15_3224 are separated by 61 nucleotides
HP15_3222: HP15_3222 - acetyl-CoA carboxylase biotin carboxylase subunit, at 3,374,025 to 3,375,371
_3222
HP15_3223: HP15_3223 - ribosomal protein L11 methyltransferase, at 3,375,374 to 3,376,270
_3223
HP15_3224: HP15_3224 - family finger-like protein, at 3,376,332 to 3,377,588
_3224
Position (kb)
3375
3376
3377 Strain fitness (log2 ratio)
-2
-1
0
1 at 3375.389 kb on - strand at 3375.404 kb on + strand at 3375.404 kb on + strand at 3375.490 kb on - strand, within HP15_3223 at 3375.577 kb on + strand, within HP15_3223 at 3375.600 kb on + strand, within HP15_3223 at 3375.639 kb on + strand, within HP15_3223 at 3375.669 kb on - strand, within HP15_3223 at 3375.673 kb on + strand, within HP15_3223 at 3375.723 kb on - strand, within HP15_3223 at 3375.916 kb on - strand, within HP15_3223 at 3375.924 kb on - strand, within HP15_3223 at 3375.928 kb on - strand, within HP15_3223 at 3375.962 kb on + strand, within HP15_3223 at 3376.014 kb on - strand, within HP15_3223 at 3376.021 kb on + strand, within HP15_3223 at 3376.056 kb on + strand, within HP15_3223 at 3376.103 kb on - strand, within HP15_3223 at 3376.223 kb on - strand at 3376.223 kb on - strand at 3376.316 kb on - strand at 3376.387 kb on - strand at 3376.398 kb on - strand at 3376.528 kb on - strand, within HP15_3224 at 3376.566 kb on - strand, within HP15_3224 at 3376.646 kb on - strand, within HP15_3224 at 3376.681 kb on + strand, within HP15_3224 at 3376.689 kb on - strand, within HP15_3224 at 3376.689 kb on - strand, within HP15_3224 at 3376.817 kb on + strand, within HP15_3224 at 3376.825 kb on - strand, within HP15_3224 at 3376.868 kb on + strand, within HP15_3224 at 3376.898 kb on - strand, within HP15_3224 at 3376.939 kb on + strand, within HP15_3224 at 3376.948 kb on + strand, within HP15_3224 at 3377.118 kb on + strand, within HP15_3224 at 3377.126 kb on - strand, within HP15_3224 at 3377.144 kb on - strand, within HP15_3224 at 3377.147 kb on + strand, within HP15_3224 at 3377.203 kb on + strand, within HP15_3224 at 3377.211 kb on - strand, within HP15_3224 at 3377.211 kb on - strand, within HP15_3224 at 3377.211 kb on - strand, within HP15_3224 at 3377.241 kb on - strand, within HP15_3224 at 3377.270 kb on - strand, within HP15_3224
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 3,375,389 - +0.2 3,375,404 + -0.8 3,375,404 + +0.8 3,375,490 - HP15_3223 0.13 +0.7 3,375,577 + HP15_3223 0.23 +0.6 3,375,600 + HP15_3223 0.25 +1.0 3,375,639 + HP15_3223 0.30 +0.4 3,375,669 - HP15_3223 0.33 -0.6 3,375,673 + HP15_3223 0.33 +0.7 3,375,723 - HP15_3223 0.39 +1.3 3,375,916 - HP15_3223 0.60 +0.8 3,375,924 - HP15_3223 0.61 +0.5 3,375,928 - HP15_3223 0.62 +1.0 3,375,962 + HP15_3223 0.66 +1.1 3,376,014 - HP15_3223 0.71 +1.7 3,376,021 + HP15_3223 0.72 +0.4 3,376,056 + HP15_3223 0.76 +0.6 3,376,103 - HP15_3223 0.81 -0.1 3,376,223 - -1.0 3,376,223 - -0.8 3,376,316 - +0.5 3,376,387 - +0.2 3,376,398 - +0.1 3,376,528 - HP15_3224 0.16 +0.4 3,376,566 - HP15_3224 0.19 -0.5 3,376,646 - HP15_3224 0.25 -0.5 3,376,681 + HP15_3224 0.28 +1.1 3,376,689 - HP15_3224 0.28 -2.7 3,376,689 - HP15_3224 0.28 +0.3 3,376,817 + HP15_3224 0.39 +1.0 3,376,825 - HP15_3224 0.39 -0.4 3,376,868 + HP15_3224 0.43 -1.2 3,376,898 - HP15_3224 0.45 -0.7 3,376,939 + HP15_3224 0.48 +0.2 3,376,948 + HP15_3224 0.49 -1.0 3,377,118 + HP15_3224 0.63 +0.1 3,377,126 - HP15_3224 0.63 +1.1 3,377,144 - HP15_3224 0.65 -0.6 3,377,147 + HP15_3224 0.65 -0.7 3,377,203 + HP15_3224 0.69 -0.0 3,377,211 - HP15_3224 0.70 -1.1 3,377,211 - HP15_3224 0.70 -2.3 3,377,211 - HP15_3224 0.70 -1.3 3,377,241 - HP15_3224 0.72 -2.1 3,377,270 - HP15_3224 0.75 -0.3
Or see this region's nucleotide sequence