Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2881 and HP15_2882 are separated by 0 nucleotides HP15_2882 and HP15_2883 are separated by 204 nucleotides HP15_2883 and HP15_2884 are separated by 44 nucleotides
HP15_2881: HP15_2881 - urea short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein, at 3,017,402 to 3,018,691
_2881
HP15_2882: HP15_2882 - hypothetical protein, at 3,018,692 to 3,018,856
_2882
HP15_2883: HP15_2883 - glutamyl-tRNA (Gln) amidotransferase subunit A, at 3,019,061 to 3,020,875
_2883
HP15_2884: HP15_2884 - transcriptional regulator, GntR family, at 3,020,920 to 3,021,612
_2884
Position (kb)
3019
3020
3021 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3018.098 kb on + strand, within HP15_2881 at 3018.106 kb on - strand, within HP15_2881 at 3018.141 kb on + strand, within HP15_2881 at 3018.156 kb on - strand, within HP15_2881 at 3018.195 kb on - strand, within HP15_2881 at 3018.196 kb on + strand, within HP15_2881 at 3018.228 kb on - strand, within HP15_2881 at 3018.323 kb on + strand, within HP15_2881 at 3018.333 kb on + strand, within HP15_2881 at 3018.478 kb on - strand, within HP15_2881 at 3018.558 kb on - strand, within HP15_2881 at 3018.748 kb on - strand, within HP15_2882 at 3018.763 kb on - strand, within HP15_2882 at 3018.841 kb on - strand at 3018.870 kb on + strand at 3018.888 kb on + strand at 3018.905 kb on + strand at 3018.913 kb on + strand at 3018.918 kb on + strand at 3018.921 kb on - strand at 3018.926 kb on - strand at 3018.926 kb on - strand at 3019.002 kb on - strand at 3019.047 kb on + strand at 3019.095 kb on + strand at 3019.155 kb on + strand at 3019.201 kb on - strand at 3019.337 kb on + strand, within HP15_2883 at 3019.381 kb on + strand, within HP15_2883 at 3019.383 kb on - strand, within HP15_2883 at 3019.447 kb on - strand, within HP15_2883 at 3019.470 kb on - strand, within HP15_2883 at 3019.482 kb on + strand, within HP15_2883 at 3019.490 kb on - strand, within HP15_2883 at 3019.490 kb on - strand, within HP15_2883 at 3019.552 kb on - strand, within HP15_2883 at 3019.606 kb on + strand, within HP15_2883 at 3019.661 kb on + strand, within HP15_2883 at 3019.714 kb on - strand, within HP15_2883 at 3019.803 kb on + strand, within HP15_2883 at 3019.832 kb on - strand, within HP15_2883 at 3019.897 kb on - strand, within HP15_2883 at 3019.934 kb on - strand, within HP15_2883 at 3019.934 kb on - strand, within HP15_2883 at 3019.978 kb on + strand, within HP15_2883 at 3019.986 kb on - strand, within HP15_2883 at 3019.986 kb on - strand, within HP15_2883 at 3019.990 kb on + strand, within HP15_2883 at 3020.062 kb on + strand, within HP15_2883 at 3020.117 kb on + strand, within HP15_2883 at 3020.125 kb on - strand, within HP15_2883 at 3020.125 kb on - strand, within HP15_2883 at 3020.195 kb on + strand, within HP15_2883 at 3020.203 kb on - strand, within HP15_2883 at 3020.221 kb on + strand, within HP15_2883 at 3020.343 kb on + strand, within HP15_2883 at 3020.343 kb on + strand, within HP15_2883 at 3020.343 kb on + strand, within HP15_2883 at 3020.343 kb on - strand, within HP15_2883 at 3020.348 kb on + strand, within HP15_2883 at 3020.348 kb on + strand, within HP15_2883 at 3020.384 kb on - strand, within HP15_2883 at 3020.404 kb on + strand, within HP15_2883 at 3020.423 kb on + strand, within HP15_2883 at 3020.446 kb on - strand, within HP15_2883 at 3020.469 kb on - strand, within HP15_2883 at 3020.515 kb on + strand, within HP15_2883 at 3020.523 kb on - strand, within HP15_2883 at 3020.528 kb on + strand, within HP15_2883 at 3020.536 kb on - strand, within HP15_2883 at 3020.556 kb on + strand, within HP15_2883 at 3020.654 kb on - strand, within HP15_2883 at 3020.757 kb on - strand at 3020.826 kb on + strand at 3020.834 kb on - strand at 3020.899 kb on + strand at 3020.907 kb on - strand at 3020.959 kb on + strand at 3021.073 kb on + strand, within HP15_2884 at 3021.081 kb on - strand, within HP15_2884 at 3021.132 kb on + strand, within HP15_2884 at 3021.166 kb on + strand, within HP15_2884 at 3021.241 kb on - strand, within HP15_2884 at 3021.241 kb on - strand, within HP15_2884 at 3021.241 kb on - strand, within HP15_2884 at 3021.323 kb on + strand, within HP15_2884 at 3021.334 kb on + strand, within HP15_2884 at 3021.454 kb on - strand, within HP15_2884 at 3021.540 kb on + strand, within HP15_2884 at 3021.548 kb on - strand at 3021.555 kb on + strand at 3021.710 kb on - strand at 3021.815 kb on - strand at 3021.832 kb on - strand at 3021.862 kb on + strand at 3021.869 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 3,018,098 + HP15_2881 0.54 +0.7 3,018,106 - HP15_2881 0.55 +0.5 3,018,141 + HP15_2881 0.57 +0.0 3,018,156 - HP15_2881 0.58 -2.3 3,018,195 - HP15_2881 0.61 -0.2 3,018,196 + HP15_2881 0.62 +0.3 3,018,228 - HP15_2881 0.64 +0.1 3,018,323 + HP15_2881 0.71 +0.4 3,018,333 + HP15_2881 0.72 +0.3 3,018,478 - HP15_2881 0.83 -1.8 3,018,558 - HP15_2881 0.90 -0.0 3,018,748 - HP15_2882 0.34 +0.6 3,018,763 - HP15_2882 0.43 +2.9 3,018,841 - +0.7 3,018,870 + +0.4 3,018,888 + +0.4 3,018,905 + -1.6 3,018,913 + +2.2 3,018,918 + +0.1 3,018,921 - +0.3 3,018,926 - -0.1 3,018,926 - -1.1 3,019,002 - +0.1 3,019,047 + -1.3 3,019,095 + +0.4 3,019,155 + -0.1 3,019,201 - +0.4 3,019,337 + HP15_2883 0.15 +0.1 3,019,381 + HP15_2883 0.18 +0.0 3,019,383 - HP15_2883 0.18 +0.4 3,019,447 - HP15_2883 0.21 -0.5 3,019,470 - HP15_2883 0.23 +0.6 3,019,482 + HP15_2883 0.23 -0.2 3,019,490 - HP15_2883 0.24 -0.4 3,019,490 - HP15_2883 0.24 -1.0 3,019,552 - HP15_2883 0.27 +0.4 3,019,606 + HP15_2883 0.30 +0.2 3,019,661 + HP15_2883 0.33 -0.0 3,019,714 - HP15_2883 0.36 +0.1 3,019,803 + HP15_2883 0.41 -1.7 3,019,832 - HP15_2883 0.42 -0.4 3,019,897 - HP15_2883 0.46 -0.7 3,019,934 - HP15_2883 0.48 +0.1 3,019,934 - HP15_2883 0.48 +0.0 3,019,978 + HP15_2883 0.51 -2.5 3,019,986 - HP15_2883 0.51 -0.4 3,019,986 - HP15_2883 0.51 +0.7 3,019,990 + HP15_2883 0.51 +1.4 3,020,062 + HP15_2883 0.55 +0.3 3,020,117 + HP15_2883 0.58 +0.4 3,020,125 - HP15_2883 0.59 -1.8 3,020,125 - HP15_2883 0.59 +0.2 3,020,195 + HP15_2883 0.62 +1.1 3,020,203 - HP15_2883 0.63 +0.1 3,020,221 + HP15_2883 0.64 +0.8 3,020,343 + HP15_2883 0.71 +0.7 3,020,343 + HP15_2883 0.71 -1.4 3,020,343 + HP15_2883 0.71 -1.9 3,020,343 - HP15_2883 0.71 +1.3 3,020,348 + HP15_2883 0.71 -1.2 3,020,348 + HP15_2883 0.71 +0.4 3,020,384 - HP15_2883 0.73 +0.9 3,020,404 + HP15_2883 0.74 +1.5 3,020,423 + HP15_2883 0.75 +0.0 3,020,446 - HP15_2883 0.76 -0.4 3,020,469 - HP15_2883 0.78 +0.1 3,020,515 + HP15_2883 0.80 +0.2 3,020,523 - HP15_2883 0.81 -0.3 3,020,528 + HP15_2883 0.81 +0.6 3,020,536 - HP15_2883 0.81 -1.3 3,020,556 + HP15_2883 0.82 +0.3 3,020,654 - HP15_2883 0.88 -0.6 3,020,757 - +2.7 3,020,826 + -0.2 3,020,834 - +0.5 3,020,899 + -0.3 3,020,907 - +0.5 3,020,959 + -0.9 3,021,073 + HP15_2884 0.22 -0.7 3,021,081 - HP15_2884 0.23 -0.5 3,021,132 + HP15_2884 0.31 +0.2 3,021,166 + HP15_2884 0.35 -0.9 3,021,241 - HP15_2884 0.46 +0.1 3,021,241 - HP15_2884 0.46 -1.4 3,021,241 - HP15_2884 0.46 +1.3 3,021,323 + HP15_2884 0.58 -1.6 3,021,334 + HP15_2884 0.60 -0.2 3,021,454 - HP15_2884 0.77 -0.2 3,021,540 + HP15_2884 0.89 +0.1 3,021,548 - -0.6 3,021,555 + -1.0 3,021,710 - +0.6 3,021,815 - -1.4 3,021,832 - +0.7 3,021,862 + -1.4 3,021,869 + -0.7
Or see this region's nucleotide sequence