Strain Fitness in Marinobacter adhaerens HP15 around HP15_2883

Experiment: Control growth in Pro99_seawater

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2881 and HP15_2882 are separated by 0 nucleotidesHP15_2882 and HP15_2883 are separated by 204 nucleotidesHP15_2883 and HP15_2884 are separated by 44 nucleotides HP15_2881: HP15_2881 - urea short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein, at 3,017,402 to 3,018,691 _2881 HP15_2882: HP15_2882 - hypothetical protein, at 3,018,692 to 3,018,856 _2882 HP15_2883: HP15_2883 - glutamyl-tRNA (Gln) amidotransferase subunit A, at 3,019,061 to 3,020,875 _2883 HP15_2884: HP15_2884 - transcriptional regulator, GntR family, at 3,020,920 to 3,021,612 _2884 Position (kb) 3019 3020 3021Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3018.098 kb on + strand, within HP15_2881at 3018.106 kb on - strand, within HP15_2881at 3018.141 kb on + strand, within HP15_2881at 3018.156 kb on - strand, within HP15_2881at 3018.195 kb on - strand, within HP15_2881at 3018.196 kb on + strand, within HP15_2881at 3018.228 kb on - strand, within HP15_2881at 3018.323 kb on + strand, within HP15_2881at 3018.333 kb on + strand, within HP15_2881at 3018.478 kb on - strand, within HP15_2881at 3018.558 kb on - strand, within HP15_2881at 3018.748 kb on - strand, within HP15_2882at 3018.763 kb on - strand, within HP15_2882at 3018.841 kb on - strandat 3018.870 kb on + strandat 3018.888 kb on + strandat 3018.905 kb on + strandat 3018.913 kb on + strandat 3018.918 kb on + strandat 3018.921 kb on - strandat 3018.926 kb on - strandat 3018.926 kb on - strandat 3019.002 kb on - strandat 3019.047 kb on + strandat 3019.095 kb on + strandat 3019.155 kb on + strandat 3019.201 kb on - strandat 3019.337 kb on + strand, within HP15_2883at 3019.381 kb on + strand, within HP15_2883at 3019.383 kb on - strand, within HP15_2883at 3019.447 kb on - strand, within HP15_2883at 3019.470 kb on - strand, within HP15_2883at 3019.482 kb on + strand, within HP15_2883at 3019.490 kb on - strand, within HP15_2883at 3019.490 kb on - strand, within HP15_2883at 3019.552 kb on - strand, within HP15_2883at 3019.606 kb on + strand, within HP15_2883at 3019.661 kb on + strand, within HP15_2883at 3019.714 kb on - strand, within HP15_2883at 3019.803 kb on + strand, within HP15_2883at 3019.832 kb on - strand, within HP15_2883at 3019.897 kb on - strand, within HP15_2883at 3019.934 kb on - strand, within HP15_2883at 3019.934 kb on - strand, within HP15_2883at 3019.978 kb on + strand, within HP15_2883at 3019.986 kb on - strand, within HP15_2883at 3019.986 kb on - strand, within HP15_2883at 3019.990 kb on + strand, within HP15_2883at 3020.062 kb on + strand, within HP15_2883at 3020.117 kb on + strand, within HP15_2883at 3020.125 kb on - strand, within HP15_2883at 3020.125 kb on - strand, within HP15_2883at 3020.195 kb on + strand, within HP15_2883at 3020.203 kb on - strand, within HP15_2883at 3020.221 kb on + strand, within HP15_2883at 3020.343 kb on + strand, within HP15_2883at 3020.343 kb on + strand, within HP15_2883at 3020.343 kb on + strand, within HP15_2883at 3020.343 kb on - strand, within HP15_2883at 3020.348 kb on + strand, within HP15_2883at 3020.348 kb on + strand, within HP15_2883at 3020.384 kb on - strand, within HP15_2883at 3020.404 kb on + strand, within HP15_2883at 3020.423 kb on + strand, within HP15_2883at 3020.446 kb on - strand, within HP15_2883at 3020.469 kb on - strand, within HP15_2883at 3020.515 kb on + strand, within HP15_2883at 3020.523 kb on - strand, within HP15_2883at 3020.528 kb on + strand, within HP15_2883at 3020.536 kb on - strand, within HP15_2883at 3020.556 kb on + strand, within HP15_2883at 3020.654 kb on - strand, within HP15_2883at 3020.757 kb on - strandat 3020.826 kb on + strandat 3020.834 kb on - strandat 3020.899 kb on + strandat 3020.907 kb on - strandat 3020.959 kb on + strandat 3021.073 kb on + strand, within HP15_2884at 3021.081 kb on - strand, within HP15_2884at 3021.132 kb on + strand, within HP15_2884at 3021.166 kb on + strand, within HP15_2884at 3021.241 kb on - strand, within HP15_2884at 3021.241 kb on - strand, within HP15_2884at 3021.241 kb on - strand, within HP15_2884at 3021.323 kb on + strand, within HP15_2884at 3021.334 kb on + strand, within HP15_2884at 3021.454 kb on - strand, within HP15_2884at 3021.540 kb on + strand, within HP15_2884at 3021.548 kb on - strandat 3021.555 kb on + strandat 3021.710 kb on - strandat 3021.815 kb on - strandat 3021.832 kb on - strandat 3021.862 kb on + strandat 3021.869 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
remove
3,018,098 + HP15_2881 0.54 +0.7
3,018,106 - HP15_2881 0.55 +0.5
3,018,141 + HP15_2881 0.57 +0.0
3,018,156 - HP15_2881 0.58 -2.3
3,018,195 - HP15_2881 0.61 -0.2
3,018,196 + HP15_2881 0.62 +0.3
3,018,228 - HP15_2881 0.64 +0.1
3,018,323 + HP15_2881 0.71 +0.4
3,018,333 + HP15_2881 0.72 +0.3
3,018,478 - HP15_2881 0.83 -1.8
3,018,558 - HP15_2881 0.90 -0.0
3,018,748 - HP15_2882 0.34 +0.6
3,018,763 - HP15_2882 0.43 +2.9
3,018,841 - +0.7
3,018,870 + +0.4
3,018,888 + +0.4
3,018,905 + -1.6
3,018,913 + +2.2
3,018,918 + +0.1
3,018,921 - +0.3
3,018,926 - -0.1
3,018,926 - -1.1
3,019,002 - +0.1
3,019,047 + -1.3
3,019,095 + +0.4
3,019,155 + -0.1
3,019,201 - +0.4
3,019,337 + HP15_2883 0.15 +0.1
3,019,381 + HP15_2883 0.18 +0.0
3,019,383 - HP15_2883 0.18 +0.4
3,019,447 - HP15_2883 0.21 -0.5
3,019,470 - HP15_2883 0.23 +0.6
3,019,482 + HP15_2883 0.23 -0.2
3,019,490 - HP15_2883 0.24 -0.4
3,019,490 - HP15_2883 0.24 -1.0
3,019,552 - HP15_2883 0.27 +0.4
3,019,606 + HP15_2883 0.30 +0.2
3,019,661 + HP15_2883 0.33 -0.0
3,019,714 - HP15_2883 0.36 +0.1
3,019,803 + HP15_2883 0.41 -1.7
3,019,832 - HP15_2883 0.42 -0.4
3,019,897 - HP15_2883 0.46 -0.7
3,019,934 - HP15_2883 0.48 +0.1
3,019,934 - HP15_2883 0.48 +0.0
3,019,978 + HP15_2883 0.51 -2.5
3,019,986 - HP15_2883 0.51 -0.4
3,019,986 - HP15_2883 0.51 +0.7
3,019,990 + HP15_2883 0.51 +1.4
3,020,062 + HP15_2883 0.55 +0.3
3,020,117 + HP15_2883 0.58 +0.4
3,020,125 - HP15_2883 0.59 -1.8
3,020,125 - HP15_2883 0.59 +0.2
3,020,195 + HP15_2883 0.62 +1.1
3,020,203 - HP15_2883 0.63 +0.1
3,020,221 + HP15_2883 0.64 +0.8
3,020,343 + HP15_2883 0.71 +0.7
3,020,343 + HP15_2883 0.71 -1.4
3,020,343 + HP15_2883 0.71 -1.9
3,020,343 - HP15_2883 0.71 +1.3
3,020,348 + HP15_2883 0.71 -1.2
3,020,348 + HP15_2883 0.71 +0.4
3,020,384 - HP15_2883 0.73 +0.9
3,020,404 + HP15_2883 0.74 +1.5
3,020,423 + HP15_2883 0.75 +0.0
3,020,446 - HP15_2883 0.76 -0.4
3,020,469 - HP15_2883 0.78 +0.1
3,020,515 + HP15_2883 0.80 +0.2
3,020,523 - HP15_2883 0.81 -0.3
3,020,528 + HP15_2883 0.81 +0.6
3,020,536 - HP15_2883 0.81 -1.3
3,020,556 + HP15_2883 0.82 +0.3
3,020,654 - HP15_2883 0.88 -0.6
3,020,757 - +2.7
3,020,826 + -0.2
3,020,834 - +0.5
3,020,899 + -0.3
3,020,907 - +0.5
3,020,959 + -0.9
3,021,073 + HP15_2884 0.22 -0.7
3,021,081 - HP15_2884 0.23 -0.5
3,021,132 + HP15_2884 0.31 +0.2
3,021,166 + HP15_2884 0.35 -0.9
3,021,241 - HP15_2884 0.46 +0.1
3,021,241 - HP15_2884 0.46 -1.4
3,021,241 - HP15_2884 0.46 +1.3
3,021,323 + HP15_2884 0.58 -1.6
3,021,334 + HP15_2884 0.60 -0.2
3,021,454 - HP15_2884 0.77 -0.2
3,021,540 + HP15_2884 0.89 +0.1
3,021,548 - -0.6
3,021,555 + -1.0
3,021,710 - +0.6
3,021,815 - -1.4
3,021,832 - +0.7
3,021,862 + -1.4
3,021,869 + -0.7

Or see this region's nucleotide sequence