Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2880 and HP15_2881 are separated by 95 nucleotides HP15_2881 and HP15_2882 are separated by 0 nucleotides HP15_2882 and HP15_2883 are separated by 204 nucleotides
HP15_2880: HP15_2880 - urea ABC transporter, permease protein UrtB, at 3,015,708 to 3,017,306
_2880
HP15_2881: HP15_2881 - urea short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein, at 3,017,402 to 3,018,691
_2881
HP15_2882: HP15_2882 - hypothetical protein, at 3,018,692 to 3,018,856
_2882
HP15_2883: HP15_2883 - glutamyl-tRNA (Gln) amidotransferase subunit A, at 3,019,061 to 3,020,875
_2883
Position (kb)
3017
3018
3019 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3016.412 kb on - strand at 3016.419 kb on + strand, within HP15_2880 at 3016.468 kb on + strand, within HP15_2880 at 3016.527 kb on - strand, within HP15_2880 at 3016.550 kb on + strand, within HP15_2880 at 3016.553 kb on - strand, within HP15_2880 at 3016.680 kb on + strand, within HP15_2880 at 3016.680 kb on + strand, within HP15_2880 at 3016.695 kb on + strand, within HP15_2880 at 3016.732 kb on + strand, within HP15_2880 at 3016.861 kb on + strand, within HP15_2880 at 3016.930 kb on + strand, within HP15_2880 at 3016.930 kb on + strand, within HP15_2880 at 3016.971 kb on + strand, within HP15_2880 at 3017.035 kb on + strand, within HP15_2880 at 3017.117 kb on - strand, within HP15_2880 at 3017.129 kb on - strand, within HP15_2880 at 3017.184 kb on - strand at 3017.237 kb on + strand at 3017.237 kb on - strand at 3017.402 kb on + strand at 3017.420 kb on + strand at 3017.551 kb on + strand, within HP15_2881 at 3017.551 kb on + strand, within HP15_2881 at 3017.559 kb on - strand, within HP15_2881 at 3017.559 kb on - strand, within HP15_2881 at 3017.559 kb on - strand, within HP15_2881 at 3017.562 kb on + strand, within HP15_2881 at 3017.663 kb on + strand, within HP15_2881 at 3017.671 kb on - strand, within HP15_2881 at 3017.675 kb on - strand, within HP15_2881 at 3017.756 kb on + strand, within HP15_2881 at 3017.983 kb on + strand, within HP15_2881 at 3017.991 kb on - strand, within HP15_2881 at 3018.020 kb on - strand, within HP15_2881 at 3018.098 kb on + strand, within HP15_2881 at 3018.106 kb on - strand, within HP15_2881 at 3018.141 kb on + strand, within HP15_2881 at 3018.156 kb on - strand, within HP15_2881 at 3018.195 kb on - strand, within HP15_2881 at 3018.196 kb on + strand, within HP15_2881 at 3018.228 kb on - strand, within HP15_2881 at 3018.323 kb on + strand, within HP15_2881 at 3018.333 kb on + strand, within HP15_2881 at 3018.478 kb on - strand, within HP15_2881 at 3018.558 kb on - strand, within HP15_2881 at 3018.748 kb on - strand, within HP15_2882 at 3018.763 kb on - strand, within HP15_2882 at 3018.841 kb on - strand at 3018.870 kb on + strand at 3018.888 kb on + strand at 3018.905 kb on + strand at 3018.913 kb on + strand at 3018.918 kb on + strand at 3018.921 kb on - strand at 3018.926 kb on - strand at 3018.926 kb on - strand at 3019.002 kb on - strand at 3019.047 kb on + strand at 3019.095 kb on + strand at 3019.155 kb on + strand at 3019.201 kb on - strand at 3019.337 kb on + strand, within HP15_2883 at 3019.381 kb on + strand, within HP15_2883 at 3019.383 kb on - strand, within HP15_2883 at 3019.447 kb on - strand, within HP15_2883 at 3019.470 kb on - strand, within HP15_2883 at 3019.482 kb on + strand, within HP15_2883 at 3019.490 kb on - strand, within HP15_2883 at 3019.490 kb on - strand, within HP15_2883 at 3019.552 kb on - strand, within HP15_2883 at 3019.606 kb on + strand, within HP15_2883 at 3019.661 kb on + strand, within HP15_2883
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 3,016,412 - +0.8 3,016,419 + HP15_2880 0.44 -0.2 3,016,468 + HP15_2880 0.48 +0.9 3,016,527 - HP15_2880 0.51 -0.1 3,016,550 + HP15_2880 0.53 +0.7 3,016,553 - HP15_2880 0.53 +1.0 3,016,680 + HP15_2880 0.61 -0.3 3,016,680 + HP15_2880 0.61 -0.0 3,016,695 + HP15_2880 0.62 -1.6 3,016,732 + HP15_2880 0.64 -1.1 3,016,861 + HP15_2880 0.72 +1.1 3,016,930 + HP15_2880 0.76 -1.3 3,016,930 + HP15_2880 0.76 +0.5 3,016,971 + HP15_2880 0.79 -0.2 3,017,035 + HP15_2880 0.83 -0.2 3,017,117 - HP15_2880 0.88 -0.6 3,017,129 - HP15_2880 0.89 -0.7 3,017,184 - -1.1 3,017,237 + -0.1 3,017,237 - +0.1 3,017,402 + +0.8 3,017,420 + -0.1 3,017,551 + HP15_2881 0.12 +0.1 3,017,551 + HP15_2881 0.12 +0.5 3,017,559 - HP15_2881 0.12 -1.0 3,017,559 - HP15_2881 0.12 -0.9 3,017,559 - HP15_2881 0.12 +0.3 3,017,562 + HP15_2881 0.12 +0.2 3,017,663 + HP15_2881 0.20 +0.1 3,017,671 - HP15_2881 0.21 -0.6 3,017,675 - HP15_2881 0.21 +0.2 3,017,756 + HP15_2881 0.27 +0.1 3,017,983 + HP15_2881 0.45 +1.1 3,017,991 - HP15_2881 0.46 +0.0 3,018,020 - HP15_2881 0.48 -0.1 3,018,098 + HP15_2881 0.54 +0.7 3,018,106 - HP15_2881 0.55 +0.5 3,018,141 + HP15_2881 0.57 +0.0 3,018,156 - HP15_2881 0.58 -2.3 3,018,195 - HP15_2881 0.61 -0.2 3,018,196 + HP15_2881 0.62 +0.3 3,018,228 - HP15_2881 0.64 +0.1 3,018,323 + HP15_2881 0.71 +0.4 3,018,333 + HP15_2881 0.72 +0.3 3,018,478 - HP15_2881 0.83 -1.8 3,018,558 - HP15_2881 0.90 -0.0 3,018,748 - HP15_2882 0.34 +0.6 3,018,763 - HP15_2882 0.43 +2.9 3,018,841 - +0.7 3,018,870 + +0.4 3,018,888 + +0.4 3,018,905 + -1.6 3,018,913 + +2.2 3,018,918 + +0.1 3,018,921 - +0.3 3,018,926 - -0.1 3,018,926 - -1.1 3,019,002 - +0.1 3,019,047 + -1.3 3,019,095 + +0.4 3,019,155 + -0.1 3,019,201 - +0.4 3,019,337 + HP15_2883 0.15 +0.1 3,019,381 + HP15_2883 0.18 +0.0 3,019,383 - HP15_2883 0.18 +0.4 3,019,447 - HP15_2883 0.21 -0.5 3,019,470 - HP15_2883 0.23 +0.6 3,019,482 + HP15_2883 0.23 -0.2 3,019,490 - HP15_2883 0.24 -0.4 3,019,490 - HP15_2883 0.24 -1.0 3,019,552 - HP15_2883 0.27 +0.4 3,019,606 + HP15_2883 0.30 +0.2 3,019,661 + HP15_2883 0.33 -0.0
Or see this region's nucleotide sequence