Strain Fitness in Marinobacter adhaerens HP15 around HP15_2881

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2880 and HP15_2881 are separated by 95 nucleotidesHP15_2881 and HP15_2882 are separated by 0 nucleotidesHP15_2882 and HP15_2883 are separated by 204 nucleotides HP15_2880: HP15_2880 - urea ABC transporter, permease protein UrtB, at 3,015,708 to 3,017,306 _2880 HP15_2881: HP15_2881 - urea short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein, at 3,017,402 to 3,018,691 _2881 HP15_2882: HP15_2882 - hypothetical protein, at 3,018,692 to 3,018,856 _2882 HP15_2883: HP15_2883 - glutamyl-tRNA (Gln) amidotransferase subunit A, at 3,019,061 to 3,020,875 _2883 Position (kb) 3017 3018 3019Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3016.412 kb on - strandat 3016.419 kb on + strand, within HP15_2880at 3016.468 kb on + strand, within HP15_2880at 3016.527 kb on - strand, within HP15_2880at 3016.550 kb on + strand, within HP15_2880at 3016.553 kb on - strand, within HP15_2880at 3016.680 kb on + strand, within HP15_2880at 3016.680 kb on + strand, within HP15_2880at 3016.695 kb on + strand, within HP15_2880at 3016.732 kb on + strand, within HP15_2880at 3016.861 kb on + strand, within HP15_2880at 3016.930 kb on + strand, within HP15_2880at 3016.930 kb on + strand, within HP15_2880at 3016.971 kb on + strand, within HP15_2880at 3017.035 kb on + strand, within HP15_2880at 3017.117 kb on - strand, within HP15_2880at 3017.129 kb on - strand, within HP15_2880at 3017.184 kb on - strandat 3017.237 kb on + strandat 3017.237 kb on - strandat 3017.402 kb on + strandat 3017.420 kb on + strandat 3017.551 kb on + strand, within HP15_2881at 3017.551 kb on + strand, within HP15_2881at 3017.559 kb on - strand, within HP15_2881at 3017.559 kb on - strand, within HP15_2881at 3017.559 kb on - strand, within HP15_2881at 3017.562 kb on + strand, within HP15_2881at 3017.663 kb on + strand, within HP15_2881at 3017.671 kb on - strand, within HP15_2881at 3017.675 kb on - strand, within HP15_2881at 3017.756 kb on + strand, within HP15_2881at 3017.983 kb on + strand, within HP15_2881at 3017.991 kb on - strand, within HP15_2881at 3018.020 kb on - strand, within HP15_2881at 3018.098 kb on + strand, within HP15_2881at 3018.106 kb on - strand, within HP15_2881at 3018.141 kb on + strand, within HP15_2881at 3018.156 kb on - strand, within HP15_2881at 3018.195 kb on - strand, within HP15_2881at 3018.196 kb on + strand, within HP15_2881at 3018.228 kb on - strand, within HP15_2881at 3018.323 kb on + strand, within HP15_2881at 3018.333 kb on + strand, within HP15_2881at 3018.478 kb on - strand, within HP15_2881at 3018.558 kb on - strand, within HP15_2881at 3018.748 kb on - strand, within HP15_2882at 3018.763 kb on - strand, within HP15_2882at 3018.841 kb on - strandat 3018.870 kb on + strandat 3018.888 kb on + strandat 3018.905 kb on + strandat 3018.913 kb on + strandat 3018.918 kb on + strandat 3018.921 kb on - strandat 3018.926 kb on - strandat 3018.926 kb on - strandat 3019.002 kb on - strandat 3019.047 kb on + strandat 3019.095 kb on + strandat 3019.155 kb on + strandat 3019.201 kb on - strandat 3019.337 kb on + strand, within HP15_2883at 3019.381 kb on + strand, within HP15_2883at 3019.383 kb on - strand, within HP15_2883at 3019.447 kb on - strand, within HP15_2883at 3019.470 kb on - strand, within HP15_2883at 3019.482 kb on + strand, within HP15_2883at 3019.490 kb on - strand, within HP15_2883at 3019.490 kb on - strand, within HP15_2883at 3019.552 kb on - strand, within HP15_2883at 3019.606 kb on + strand, within HP15_2883at 3019.661 kb on + strand, within HP15_2883

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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3,016,412 - +0.8
3,016,419 + HP15_2880 0.44 -0.2
3,016,468 + HP15_2880 0.48 +0.9
3,016,527 - HP15_2880 0.51 -0.1
3,016,550 + HP15_2880 0.53 +0.7
3,016,553 - HP15_2880 0.53 +1.0
3,016,680 + HP15_2880 0.61 -0.3
3,016,680 + HP15_2880 0.61 -0.0
3,016,695 + HP15_2880 0.62 -1.6
3,016,732 + HP15_2880 0.64 -1.1
3,016,861 + HP15_2880 0.72 +1.1
3,016,930 + HP15_2880 0.76 -1.3
3,016,930 + HP15_2880 0.76 +0.5
3,016,971 + HP15_2880 0.79 -0.2
3,017,035 + HP15_2880 0.83 -0.2
3,017,117 - HP15_2880 0.88 -0.6
3,017,129 - HP15_2880 0.89 -0.7
3,017,184 - -1.1
3,017,237 + -0.1
3,017,237 - +0.1
3,017,402 + +0.8
3,017,420 + -0.1
3,017,551 + HP15_2881 0.12 +0.1
3,017,551 + HP15_2881 0.12 +0.5
3,017,559 - HP15_2881 0.12 -1.0
3,017,559 - HP15_2881 0.12 -0.9
3,017,559 - HP15_2881 0.12 +0.3
3,017,562 + HP15_2881 0.12 +0.2
3,017,663 + HP15_2881 0.20 +0.1
3,017,671 - HP15_2881 0.21 -0.6
3,017,675 - HP15_2881 0.21 +0.2
3,017,756 + HP15_2881 0.27 +0.1
3,017,983 + HP15_2881 0.45 +1.1
3,017,991 - HP15_2881 0.46 +0.0
3,018,020 - HP15_2881 0.48 -0.1
3,018,098 + HP15_2881 0.54 +0.7
3,018,106 - HP15_2881 0.55 +0.5
3,018,141 + HP15_2881 0.57 +0.0
3,018,156 - HP15_2881 0.58 -2.3
3,018,195 - HP15_2881 0.61 -0.2
3,018,196 + HP15_2881 0.62 +0.3
3,018,228 - HP15_2881 0.64 +0.1
3,018,323 + HP15_2881 0.71 +0.4
3,018,333 + HP15_2881 0.72 +0.3
3,018,478 - HP15_2881 0.83 -1.8
3,018,558 - HP15_2881 0.90 -0.0
3,018,748 - HP15_2882 0.34 +0.6
3,018,763 - HP15_2882 0.43 +2.9
3,018,841 - +0.7
3,018,870 + +0.4
3,018,888 + +0.4
3,018,905 + -1.6
3,018,913 + +2.2
3,018,918 + +0.1
3,018,921 - +0.3
3,018,926 - -0.1
3,018,926 - -1.1
3,019,002 - +0.1
3,019,047 + -1.3
3,019,095 + +0.4
3,019,155 + -0.1
3,019,201 - +0.4
3,019,337 + HP15_2883 0.15 +0.1
3,019,381 + HP15_2883 0.18 +0.0
3,019,383 - HP15_2883 0.18 +0.4
3,019,447 - HP15_2883 0.21 -0.5
3,019,470 - HP15_2883 0.23 +0.6
3,019,482 + HP15_2883 0.23 -0.2
3,019,490 - HP15_2883 0.24 -0.4
3,019,490 - HP15_2883 0.24 -1.0
3,019,552 - HP15_2883 0.27 +0.4
3,019,606 + HP15_2883 0.30 +0.2
3,019,661 + HP15_2883 0.33 -0.0

Or see this region's nucleotide sequence