Strain Fitness in Marinobacter adhaerens HP15 around HP15_2733

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2732 and HP15_2733 are separated by 200 nucleotidesHP15_2733 and HP15_2734 overlap by 26 nucleotides HP15_2732: HP15_2732 - drug resistance transporter, Bcr/CflA subfamily, at 2,883,896 to 2,885,089 _2732 HP15_2733: HP15_2733 - protein containing sulphatase-modifying factor domain, at 2,885,290 to 2,887,350 _2733 HP15_2734: HP15_2734 - conserved hypothetical protein, at 2,887,325 to 2,888,482 _2734 Position (kb) 2885 2886 2887 2888Strain fitness (log2 ratio) -2 -1 0 1 2at 2884.368 kb on - strand, within HP15_2732at 2884.368 kb on - strand, within HP15_2732at 2884.368 kb on - strand, within HP15_2732at 2884.437 kb on + strand, within HP15_2732at 2884.573 kb on + strand, within HP15_2732at 2884.671 kb on + strand, within HP15_2732at 2884.783 kb on + strand, within HP15_2732at 2884.791 kb on - strand, within HP15_2732at 2884.844 kb on - strand, within HP15_2732at 2884.899 kb on + strand, within HP15_2732at 2884.985 kb on + strandat 2884.988 kb on - strandat 2884.993 kb on - strandat 2884.993 kb on - strandat 2884.993 kb on - strandat 2884.993 kb on - strandat 2884.993 kb on - strandat 2884.993 kb on - strandat 2885.155 kb on + strandat 2885.267 kb on - strandat 2885.525 kb on + strand, within HP15_2733at 2885.611 kb on - strand, within HP15_2733at 2885.611 kb on - strand, within HP15_2733at 2885.615 kb on + strand, within HP15_2733at 2885.740 kb on - strand, within HP15_2733at 2885.835 kb on - strand, within HP15_2733at 2885.859 kb on + strand, within HP15_2733at 2885.931 kb on + strand, within HP15_2733at 2885.931 kb on + strand, within HP15_2733at 2885.931 kb on + strand, within HP15_2733at 2885.939 kb on - strand, within HP15_2733at 2885.939 kb on - strand, within HP15_2733at 2885.939 kb on - strand, within HP15_2733at 2885.985 kb on + strand, within HP15_2733at 2885.985 kb on + strand, within HP15_2733at 2886.017 kb on - strand, within HP15_2733at 2886.019 kb on + strand, within HP15_2733at 2886.167 kb on + strand, within HP15_2733at 2886.295 kb on + strand, within HP15_2733at 2886.389 kb on - strand, within HP15_2733at 2886.671 kb on - strand, within HP15_2733at 2886.751 kb on + strand, within HP15_2733at 2886.751 kb on + strand, within HP15_2733at 2886.753 kb on - strand, within HP15_2733at 2886.759 kb on - strand, within HP15_2733at 2886.782 kb on - strand, within HP15_2733at 2886.877 kb on - strand, within HP15_2733at 2886.899 kb on - strand, within HP15_2733at 2886.918 kb on + strand, within HP15_2733at 2886.994 kb on - strand, within HP15_2733at 2887.020 kb on - strand, within HP15_2733at 2887.079 kb on + strand, within HP15_2733at 2887.126 kb on + strand, within HP15_2733at 2887.134 kb on - strand, within HP15_2733at 2887.134 kb on - strand, within HP15_2733at 2887.212 kb on - strandat 2887.335 kb on - strandat 2887.362 kb on - strandat 2887.476 kb on - strand, within HP15_2734at 2887.623 kb on - strand, within HP15_2734at 2887.712 kb on - strand, within HP15_2734at 2887.722 kb on - strand, within HP15_2734at 2887.734 kb on - strand, within HP15_2734at 2887.734 kb on - strand, within HP15_2734at 2887.917 kb on + strand, within HP15_2734at 2887.925 kb on - strand, within HP15_2734at 2888.029 kb on + strand, within HP15_2734at 2888.029 kb on + strand, within HP15_2734at 2888.037 kb on - strand, within HP15_2734at 2888.148 kb on + strand, within HP15_2734at 2888.181 kb on - strand, within HP15_2734at 2888.261 kb on - strand, within HP15_2734at 2888.345 kb on - strand, within HP15_2734

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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2,884,368 - HP15_2732 0.40 -0.0
2,884,368 - HP15_2732 0.40 -0.1
2,884,368 - HP15_2732 0.40 -0.2
2,884,437 + HP15_2732 0.45 -0.1
2,884,573 + HP15_2732 0.57 -2.3
2,884,671 + HP15_2732 0.65 -0.5
2,884,783 + HP15_2732 0.74 +0.5
2,884,791 - HP15_2732 0.75 +2.1
2,884,844 - HP15_2732 0.79 +0.3
2,884,899 + HP15_2732 0.84 -0.4
2,884,985 + -0.0
2,884,988 - +0.6
2,884,993 - -0.9
2,884,993 - -1.4
2,884,993 - +2.5
2,884,993 - -0.1
2,884,993 - -0.3
2,884,993 - +0.3
2,885,155 + -0.6
2,885,267 - -0.1
2,885,525 + HP15_2733 0.11 +0.0
2,885,611 - HP15_2733 0.16 +0.7
2,885,611 - HP15_2733 0.16 -0.2
2,885,615 + HP15_2733 0.16 -0.2
2,885,740 - HP15_2733 0.22 -0.2
2,885,835 - HP15_2733 0.26 +0.6
2,885,859 + HP15_2733 0.28 +0.2
2,885,931 + HP15_2733 0.31 -0.5
2,885,931 + HP15_2733 0.31 -0.5
2,885,931 + HP15_2733 0.31 -1.7
2,885,939 - HP15_2733 0.31 -0.1
2,885,939 - HP15_2733 0.31 +0.4
2,885,939 - HP15_2733 0.31 +0.5
2,885,985 + HP15_2733 0.34 +0.4
2,885,985 + HP15_2733 0.34 +0.3
2,886,017 - HP15_2733 0.35 +0.1
2,886,019 + HP15_2733 0.35 -1.0
2,886,167 + HP15_2733 0.43 -2.0
2,886,295 + HP15_2733 0.49 +0.6
2,886,389 - HP15_2733 0.53 -0.1
2,886,671 - HP15_2733 0.67 -0.2
2,886,751 + HP15_2733 0.71 +0.0
2,886,751 + HP15_2733 0.71 +0.7
2,886,753 - HP15_2733 0.71 +0.3
2,886,759 - HP15_2733 0.71 +1.0
2,886,782 - HP15_2733 0.72 -1.4
2,886,877 - HP15_2733 0.77 -0.6
2,886,899 - HP15_2733 0.78 +1.7
2,886,918 + HP15_2733 0.79 +0.2
2,886,994 - HP15_2733 0.83 -0.8
2,887,020 - HP15_2733 0.84 +0.2
2,887,079 + HP15_2733 0.87 +1.0
2,887,126 + HP15_2733 0.89 +0.5
2,887,134 - HP15_2733 0.89 +0.2
2,887,134 - HP15_2733 0.89 +0.2
2,887,212 - -0.6
2,887,335 - -0.6
2,887,362 - +1.0
2,887,476 - HP15_2734 0.13 +0.2
2,887,623 - HP15_2734 0.26 +0.8
2,887,712 - HP15_2734 0.33 +1.3
2,887,722 - HP15_2734 0.34 +0.2
2,887,734 - HP15_2734 0.35 -0.5
2,887,734 - HP15_2734 0.35 +0.6
2,887,917 + HP15_2734 0.51 -2.4
2,887,925 - HP15_2734 0.52 -1.2
2,888,029 + HP15_2734 0.61 +0.5
2,888,029 + HP15_2734 0.61 -0.6
2,888,037 - HP15_2734 0.61 -0.1
2,888,148 + HP15_2734 0.71 -0.4
2,888,181 - HP15_2734 0.74 -0.0
2,888,261 - HP15_2734 0.81 +0.1
2,888,345 - HP15_2734 0.88 +1.2

Or see this region's nucleotide sequence