Strain Fitness in Marinobacter adhaerens HP15 around HP15_2728

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2726 and HP15_2727 are separated by 175 nucleotidesHP15_2727 and HP15_2728 are separated by 13 nucleotidesHP15_2728 and HP15_2729 are separated by 27 nucleotidesHP15_2729 and HP15_2730 are separated by 19 nucleotides HP15_2726: HP15_2726 - abortive infection protein-like protein, at 2,878,167 to 2,878,976 _2726 HP15_2727: HP15_2727 - hypothetical protein, at 2,879,152 to 2,879,262 _2727 HP15_2728: HP15_2728 - uncharacterized conserved protein UCP028696, at 2,879,276 to 2,880,232 _2728 HP15_2729: HP15_2729 - short-chain dehydrogenase/reductase SDR, at 2,880,260 to 2,881,057 _2729 HP15_2730: HP15_2730 - mechanosensitive ion channel family protein, at 2,881,077 to 2,882,126 _2730 Position (kb) 2879 2880 2881Strain fitness (log2 ratio) -2 -1 0 1 2at 2878.290 kb on + strand, within HP15_2726at 2878.340 kb on - strand, within HP15_2726at 2878.354 kb on - strand, within HP15_2726at 2878.449 kb on + strand, within HP15_2726at 2878.471 kb on + strand, within HP15_2726at 2878.471 kb on + strand, within HP15_2726at 2878.471 kb on + strand, within HP15_2726at 2878.483 kb on - strand, within HP15_2726at 2878.499 kb on + strand, within HP15_2726at 2878.543 kb on - strand, within HP15_2726at 2878.558 kb on - strand, within HP15_2726at 2878.575 kb on - strand, within HP15_2726at 2878.636 kb on + strand, within HP15_2726at 2878.691 kb on + strand, within HP15_2726at 2878.710 kb on - strand, within HP15_2726at 2878.734 kb on + strand, within HP15_2726at 2878.774 kb on - strand, within HP15_2726at 2878.820 kb on - strand, within HP15_2726at 2878.852 kb on + strand, within HP15_2726at 2878.973 kb on + strandat 2878.988 kb on + strandat 2878.988 kb on + strandat 2879.024 kb on + strandat 2879.032 kb on - strandat 2879.079 kb on + strandat 2879.120 kb on - strandat 2879.300 kb on + strandat 2879.300 kb on + strandat 2879.305 kb on + strandat 2879.305 kb on + strandat 2879.313 kb on - strandat 2879.475 kb on - strand, within HP15_2728at 2879.503 kb on - strand, within HP15_2728at 2879.508 kb on + strand, within HP15_2728at 2879.594 kb on - strand, within HP15_2728at 2879.754 kb on + strand, within HP15_2728at 2879.819 kb on - strand, within HP15_2728at 2879.819 kb on - strandat 2879.819 kb on - strand, within HP15_2728at 2879.824 kb on - strand, within HP15_2728at 2879.870 kb on - strand, within HP15_2728at 2879.978 kb on + strand, within HP15_2728at 2879.978 kb on + strand, within HP15_2728at 2880.034 kb on - strand, within HP15_2728at 2880.049 kb on + strand, within HP15_2728at 2880.057 kb on - strand, within HP15_2728at 2880.085 kb on + strand, within HP15_2728at 2880.117 kb on - strand, within HP15_2728at 2880.170 kb on + strandat 2880.220 kb on - strandat 2880.266 kb on - strandat 2880.320 kb on - strandat 2880.338 kb on - strandat 2880.425 kb on + strand, within HP15_2729at 2880.538 kb on - strand, within HP15_2729at 2880.543 kb on + strand, within HP15_2729at 2880.684 kb on + strand, within HP15_2729at 2880.692 kb on - strand, within HP15_2729at 2880.694 kb on + strand, within HP15_2729at 2880.697 kb on - strand, within HP15_2729at 2880.697 kb on - strand, within HP15_2729at 2880.697 kb on - strand, within HP15_2729at 2880.735 kb on - strand, within HP15_2729at 2880.865 kb on + strand, within HP15_2729at 2880.873 kb on - strand, within HP15_2729at 2880.873 kb on - strand, within HP15_2729at 2880.883 kb on - strand, within HP15_2729at 2880.900 kb on + strand, within HP15_2729at 2881.055 kb on + strandat 2881.063 kb on - strandat 2881.117 kb on + strandat 2881.123 kb on - strandat 2881.172 kb on + strandat 2881.198 kb on - strand, within HP15_2730

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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2,878,290 + HP15_2726 0.15 +1.0
2,878,340 - HP15_2726 0.21 -0.1
2,878,354 - HP15_2726 0.23 +0.8
2,878,449 + HP15_2726 0.35 -1.0
2,878,471 + HP15_2726 0.38 -0.4
2,878,471 + HP15_2726 0.38 -2.4
2,878,471 + HP15_2726 0.38 +0.3
2,878,483 - HP15_2726 0.39 +0.5
2,878,499 + HP15_2726 0.41 +0.0
2,878,543 - HP15_2726 0.46 -0.7
2,878,558 - HP15_2726 0.48 -0.8
2,878,575 - HP15_2726 0.50 -0.1
2,878,636 + HP15_2726 0.58 +0.6
2,878,691 + HP15_2726 0.65 -0.4
2,878,710 - HP15_2726 0.67 -0.5
2,878,734 + HP15_2726 0.70 -0.6
2,878,774 - HP15_2726 0.75 -0.1
2,878,820 - HP15_2726 0.81 +0.3
2,878,852 + HP15_2726 0.85 +0.3
2,878,973 + -0.4
2,878,988 + +0.2
2,878,988 + +0.4
2,879,024 + +2.3
2,879,032 - +2.1
2,879,079 + -0.1
2,879,120 - -0.7
2,879,300 + -1.1
2,879,300 + -0.6
2,879,305 + +0.1
2,879,305 + +1.1
2,879,313 - +0.0
2,879,475 - HP15_2728 0.21 -1.4
2,879,503 - HP15_2728 0.24 -1.4
2,879,508 + HP15_2728 0.24 -0.6
2,879,594 - HP15_2728 0.33 -0.1
2,879,754 + HP15_2728 0.50 -0.2
2,879,819 - HP15_2728 0.57 -1.4
2,879,819 - -0.6
2,879,819 - HP15_2728 0.57 +0.2
2,879,824 - HP15_2728 0.57 +0.1
2,879,870 - HP15_2728 0.62 -0.6
2,879,978 + HP15_2728 0.73 -0.1
2,879,978 + HP15_2728 0.73 -2.7
2,880,034 - HP15_2728 0.79 +0.7
2,880,049 + HP15_2728 0.81 -0.1
2,880,057 - HP15_2728 0.82 -0.9
2,880,085 + HP15_2728 0.85 +0.2
2,880,117 - HP15_2728 0.88 +0.5
2,880,170 + +1.0
2,880,220 - -2.1
2,880,266 - +0.4
2,880,320 - +0.1
2,880,338 - +0.2
2,880,425 + HP15_2729 0.21 +0.5
2,880,538 - HP15_2729 0.35 +0.9
2,880,543 + HP15_2729 0.35 -0.2
2,880,684 + HP15_2729 0.53 -0.8
2,880,692 - HP15_2729 0.54 -0.1
2,880,694 + HP15_2729 0.54 -0.3
2,880,697 - HP15_2729 0.55 -0.5
2,880,697 - HP15_2729 0.55 -0.6
2,880,697 - HP15_2729 0.55 -1.0
2,880,735 - HP15_2729 0.60 +0.8
2,880,865 + HP15_2729 0.76 -1.1
2,880,873 - HP15_2729 0.77 +0.0
2,880,873 - HP15_2729 0.77 -0.3
2,880,883 - HP15_2729 0.78 -1.0
2,880,900 + HP15_2729 0.80 -0.6
2,881,055 + -0.4
2,881,063 - -0.2
2,881,117 + +0.1
2,881,123 - +0.1
2,881,172 + +0.3
2,881,198 - HP15_2730 0.12 -0.5

Or see this region's nucleotide sequence