Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2603 and HP15_2604 are separated by 157 nucleotides HP15_2604 and HP15_2605 are separated by 67 nucleotides
HP15_2603: HP15_2603 - hydantoin utilization protein A, at 2,751,865 to 2,753,820
_2603
HP15_2604: HP15_2604 - protein containing DUF1329, at 2,753,978 to 2,755,195
_2604
HP15_2605: HP15_2605 - regulatory protein, LysR, at 2,755,263 to 2,756,933
_2605
Position (kb)
2753
2754
2755
2756 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2752.998 kb on + strand, within HP15_2603 at 2753.001 kb on - strand, within HP15_2603 at 2753.024 kb on - strand, within HP15_2603 at 2753.074 kb on + strand, within HP15_2603 at 2753.074 kb on + strand, within HP15_2603 at 2753.082 kb on - strand, within HP15_2603 at 2753.082 kb on - strand, within HP15_2603 at 2753.086 kb on + strand, within HP15_2603 at 2753.171 kb on - strand, within HP15_2603 at 2753.411 kb on - strand, within HP15_2603 at 2753.470 kb on - strand, within HP15_2603 at 2753.579 kb on + strand, within HP15_2603 at 2753.671 kb on + strand at 2753.672 kb on - strand at 2753.848 kb on - strand at 2753.886 kb on + strand at 2753.887 kb on + strand at 2753.913 kb on + strand at 2753.921 kb on - strand at 2753.921 kb on - strand at 2753.932 kb on + strand at 2753.940 kb on - strand at 2753.961 kb on - strand at 2754.003 kb on - strand at 2754.101 kb on + strand, within HP15_2604 at 2754.160 kb on + strand, within HP15_2604 at 2754.160 kb on + strand, within HP15_2604 at 2754.168 kb on - strand, within HP15_2604 at 2754.213 kb on + strand, within HP15_2604 at 2754.260 kb on + strand, within HP15_2604 at 2754.429 kb on + strand, within HP15_2604 at 2754.437 kb on - strand, within HP15_2604 at 2754.486 kb on + strand, within HP15_2604 at 2754.881 kb on - strand, within HP15_2604 at 2754.884 kb on + strand, within HP15_2604 at 2754.892 kb on - strand, within HP15_2604 at 2755.030 kb on - strand, within HP15_2604 at 2755.117 kb on + strand at 2755.123 kb on + strand at 2755.131 kb on - strand at 2755.199 kb on - strand at 2755.206 kb on - strand at 2755.346 kb on - strand at 2755.346 kb on - strand at 2755.411 kb on + strand at 2755.455 kb on + strand, within HP15_2605 at 2755.455 kb on + strand, within HP15_2605 at 2755.463 kb on - strand, within HP15_2605 at 2755.622 kb on + strand, within HP15_2605 at 2755.707 kb on - strand, within HP15_2605 at 2755.812 kb on - strand, within HP15_2605 at 2755.822 kb on - strand, within HP15_2605 at 2755.835 kb on - strand, within HP15_2605 at 2755.841 kb on - strand, within HP15_2605 at 2755.854 kb on - strand, within HP15_2605 at 2755.942 kb on - strand, within HP15_2605 at 2756.038 kb on - strand, within HP15_2605 at 2756.056 kb on + strand, within HP15_2605 at 2756.056 kb on + strand, within HP15_2605 at 2756.107 kb on + strand, within HP15_2605 at 2756.115 kb on - strand, within HP15_2605 at 2756.156 kb on - strand, within HP15_2605
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 2,752,998 + HP15_2603 0.58 +0.1 2,753,001 - HP15_2603 0.58 -0.2 2,753,024 - HP15_2603 0.59 +0.2 2,753,074 + HP15_2603 0.62 -0.0 2,753,074 + HP15_2603 0.62 +0.6 2,753,082 - HP15_2603 0.62 -0.3 2,753,082 - HP15_2603 0.62 +0.7 2,753,086 + HP15_2603 0.62 -0.1 2,753,171 - HP15_2603 0.67 -1.0 2,753,411 - HP15_2603 0.79 -0.1 2,753,470 - HP15_2603 0.82 -1.7 2,753,579 + HP15_2603 0.88 -0.0 2,753,671 + -0.5 2,753,672 - +0.7 2,753,848 - -0.1 2,753,886 + +1.9 2,753,887 + -0.6 2,753,913 + +0.3 2,753,921 - -0.2 2,753,921 - +0.3 2,753,932 + +0.4 2,753,940 - +0.3 2,753,961 - +0.1 2,754,003 - -0.2 2,754,101 + HP15_2604 0.10 -0.4 2,754,160 + HP15_2604 0.15 -0.0 2,754,160 + HP15_2604 0.15 +0.1 2,754,168 - HP15_2604 0.16 -0.0 2,754,213 + HP15_2604 0.19 -0.3 2,754,260 + HP15_2604 0.23 +0.5 2,754,429 + HP15_2604 0.37 +0.9 2,754,437 - HP15_2604 0.38 -1.2 2,754,486 + HP15_2604 0.42 -0.7 2,754,881 - HP15_2604 0.74 +0.9 2,754,884 + HP15_2604 0.74 +0.1 2,754,892 - HP15_2604 0.75 -1.1 2,755,030 - HP15_2604 0.86 -0.8 2,755,117 + +1.1 2,755,123 + -0.0 2,755,131 - -0.0 2,755,199 - -0.5 2,755,206 - +0.2 2,755,346 - +0.9 2,755,346 - -0.2 2,755,411 + -0.6 2,755,455 + HP15_2605 0.11 +0.4 2,755,455 + HP15_2605 0.11 +1.4 2,755,463 - HP15_2605 0.12 +0.5 2,755,622 + HP15_2605 0.21 -2.2 2,755,707 - HP15_2605 0.27 +0.8 2,755,812 - HP15_2605 0.33 -0.0 2,755,822 - HP15_2605 0.33 +0.3 2,755,835 - HP15_2605 0.34 -0.8 2,755,841 - HP15_2605 0.35 +0.6 2,755,854 - HP15_2605 0.35 +0.1 2,755,942 - HP15_2605 0.41 -1.3 2,756,038 - HP15_2605 0.46 +0.6 2,756,056 + HP15_2605 0.47 -0.0 2,756,056 + HP15_2605 0.47 +0.4 2,756,107 + HP15_2605 0.51 +0.5 2,756,115 - HP15_2605 0.51 +0.3 2,756,156 - HP15_2605 0.53 -0.1
Or see this region's nucleotide sequence