Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2466 and HP15_2467 are separated by 444 nucleotides HP15_2467 and HP15_2468 are separated by 11 nucleotides HP15_2468 and HP15_2469 overlap by 23 nucleotides HP15_2469 and HP15_2470 overlap by 4 nucleotides
HP15_2466: HP15_2466 - tRNA-i(6)A37 thiotransferase enzyme MiaB, at 2,605,925 to 2,607,271
_2466
HP15_2467: HP15_2467 - PhoH family protein, at 2,607,716 to 2,608,699
_2467
HP15_2468: HP15_2468 - metalloprotease YbeY, at 2,608,711 to 2,609,058
_2468
HP15_2469: HP15_2469 - predicted metal-dependent hydrolase, at 2,609,036 to 2,609,170
_2469
HP15_2470: HP15_2470 - metal ion transporter, at 2,609,167 to 2,610,012
_2470
Position (kb)
2607
2608
2609 Strain fitness (log2 ratio)
-1
0
1
2 at 2606.734 kb on - strand, within HP15_2466 at 2606.767 kb on + strand, within HP15_2466 at 2606.888 kb on - strand, within HP15_2466 at 2607.070 kb on + strand, within HP15_2466 at 2607.106 kb on + strand, within HP15_2466 at 2607.106 kb on + strand, within HP15_2466 at 2607.114 kb on - strand, within HP15_2466 at 2607.315 kb on + strand at 2607.316 kb on + strand at 2607.466 kb on + strand at 2607.478 kb on + strand at 2607.520 kb on - strand at 2607.585 kb on + strand at 2608.025 kb on + strand, within HP15_2467 at 2608.033 kb on + strand, within HP15_2467 at 2608.041 kb on - strand, within HP15_2467 at 2608.281 kb on + strand, within HP15_2467 at 2608.504 kb on - strand, within HP15_2467 at 2608.606 kb on + strand at 2608.606 kb on + strand at 2608.614 kb on - strand at 2609.119 kb on + strand, within HP15_2469 at 2609.156 kb on + strand, within HP15_2469 at 2609.449 kb on + strand, within HP15_2470 at 2609.685 kb on - strand, within HP15_2470
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 2,606,734 - HP15_2466 0.60 -1.0 2,606,767 + HP15_2466 0.63 -0.3 2,606,888 - HP15_2466 0.71 -0.7 2,607,070 + HP15_2466 0.85 +0.6 2,607,106 + HP15_2466 0.88 +0.7 2,607,106 + HP15_2466 0.88 -0.3 2,607,114 - HP15_2466 0.88 -0.0 2,607,315 + +0.4 2,607,316 + +0.4 2,607,466 + +0.3 2,607,478 + -1.3 2,607,520 - -0.3 2,607,585 + -0.5 2,608,025 + HP15_2467 0.31 +0.3 2,608,033 + HP15_2467 0.32 +0.3 2,608,041 - HP15_2467 0.33 +2.1 2,608,281 + HP15_2467 0.57 -0.4 2,608,504 - HP15_2467 0.80 +1.3 2,608,606 + +0.7 2,608,606 + -0.0 2,608,614 - +1.6 2,609,119 + HP15_2469 0.61 +0.6 2,609,156 + HP15_2469 0.89 +0.0 2,609,449 + HP15_2470 0.33 -0.8 2,609,685 - HP15_2470 0.61 +0.3
Or see this region's nucleotide sequence