Strain Fitness in Marinobacter adhaerens HP15 around HP15_2467

Experiment: Control growth in Pro99_seawater

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2466 and HP15_2467 are separated by 444 nucleotidesHP15_2467 and HP15_2468 are separated by 11 nucleotidesHP15_2468 and HP15_2469 overlap by 23 nucleotidesHP15_2469 and HP15_2470 overlap by 4 nucleotides HP15_2466: HP15_2466 - tRNA-i(6)A37 thiotransferase enzyme MiaB, at 2,605,925 to 2,607,271 _2466 HP15_2467: HP15_2467 - PhoH family protein, at 2,607,716 to 2,608,699 _2467 HP15_2468: HP15_2468 - metalloprotease YbeY, at 2,608,711 to 2,609,058 _2468 HP15_2469: HP15_2469 - predicted metal-dependent hydrolase, at 2,609,036 to 2,609,170 _2469 HP15_2470: HP15_2470 - metal ion transporter, at 2,609,167 to 2,610,012 _2470 Position (kb) 2607 2608 2609Strain fitness (log2 ratio) -1 0 1 2at 2606.734 kb on - strand, within HP15_2466at 2606.767 kb on + strand, within HP15_2466at 2606.888 kb on - strand, within HP15_2466at 2607.070 kb on + strand, within HP15_2466at 2607.106 kb on + strand, within HP15_2466at 2607.106 kb on + strand, within HP15_2466at 2607.114 kb on - strand, within HP15_2466at 2607.315 kb on + strandat 2607.316 kb on + strandat 2607.466 kb on + strandat 2607.478 kb on + strandat 2607.520 kb on - strandat 2607.585 kb on + strandat 2608.025 kb on + strand, within HP15_2467at 2608.033 kb on + strand, within HP15_2467at 2608.041 kb on - strand, within HP15_2467at 2608.281 kb on + strand, within HP15_2467at 2608.504 kb on - strand, within HP15_2467at 2608.606 kb on + strandat 2608.606 kb on + strandat 2608.614 kb on - strandat 2609.119 kb on + strand, within HP15_2469at 2609.156 kb on + strand, within HP15_2469at 2609.449 kb on + strand, within HP15_2470at 2609.685 kb on - strand, within HP15_2470

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
remove
2,606,734 - HP15_2466 0.60 -1.0
2,606,767 + HP15_2466 0.63 -0.3
2,606,888 - HP15_2466 0.71 -0.7
2,607,070 + HP15_2466 0.85 +0.6
2,607,106 + HP15_2466 0.88 +0.7
2,607,106 + HP15_2466 0.88 -0.3
2,607,114 - HP15_2466 0.88 -0.0
2,607,315 + +0.4
2,607,316 + +0.4
2,607,466 + +0.3
2,607,478 + -1.3
2,607,520 - -0.3
2,607,585 + -0.5
2,608,025 + HP15_2467 0.31 +0.3
2,608,033 + HP15_2467 0.32 +0.3
2,608,041 - HP15_2467 0.33 +2.1
2,608,281 + HP15_2467 0.57 -0.4
2,608,504 - HP15_2467 0.80 +1.3
2,608,606 + +0.7
2,608,606 + -0.0
2,608,614 - +1.6
2,609,119 + HP15_2469 0.61 +0.6
2,609,156 + HP15_2469 0.89 +0.0
2,609,449 + HP15_2470 0.33 -0.8
2,609,685 - HP15_2470 0.61 +0.3

Or see this region's nucleotide sequence