Strain Fitness in Marinobacter adhaerens HP15 around HP15_2385

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2383 and HP15_2384 are separated by 208 nucleotidesHP15_2384 and HP15_2385 are separated by 51 nucleotidesHP15_2385 and HP15_2386 are separated by 28 nucleotidesHP15_2386 and HP15_2387 are separated by 8 nucleotides HP15_2383: HP15_2383 - nucleotide sugar epimerase/dehydratase, at 2,512,425 to 2,514,233 _2383 HP15_2384: HP15_2384 - sugar transferase, at 2,514,442 to 2,514,999 _2384 HP15_2385: HP15_2385 - UDP-glucose 6-dehydrogenase, at 2,515,051 to 2,516,223 _2385 HP15_2386: HP15_2386 - UDP-glucose 4-epimerase, at 2,516,252 to 2,517,208 _2386 HP15_2387: HP15_2387 - dTDP-glucose 4-6-dehydratase, at 2,517,217 to 2,518,164 _2387 Position (kb) 2515 2516 2517Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2514.058 kb on - strandat 2514.098 kb on + strandat 2514.108 kb on - strandat 2514.195 kb on + strandat 2514.217 kb on - strandat 2514.240 kb on + strandat 2514.240 kb on - strandat 2514.253 kb on - strandat 2514.355 kb on - strandat 2515.026 kb on - strandat 2515.036 kb on - strandat 2515.046 kb on - strandat 2515.084 kb on - strandat 2515.181 kb on + strand, within HP15_2385at 2515.249 kb on + strand, within HP15_2385at 2515.317 kb on + strand, within HP15_2385at 2515.416 kb on + strand, within HP15_2385at 2515.456 kb on - strand, within HP15_2385at 2515.529 kb on + strand, within HP15_2385at 2515.571 kb on + strand, within HP15_2385at 2515.571 kb on + strand, within HP15_2385at 2515.670 kb on - strand, within HP15_2385at 2515.746 kb on + strand, within HP15_2385at 2515.755 kb on - strand, within HP15_2385at 2515.756 kb on + strand, within HP15_2385at 2515.773 kb on + strand, within HP15_2385at 2515.775 kb on + strand, within HP15_2385at 2515.832 kb on + strand, within HP15_2385at 2515.832 kb on + strand, within HP15_2385at 2515.832 kb on + strand, within HP15_2385at 2515.832 kb on + strandat 2515.832 kb on + strand, within HP15_2385at 2515.840 kb on - strand, within HP15_2385at 2515.916 kb on - strand, within HP15_2385at 2515.924 kb on + strand, within HP15_2385at 2516.001 kb on - strand, within HP15_2385at 2516.051 kb on - strand, within HP15_2385at 2516.180 kb on + strandat 2516.195 kb on + strandat 2516.402 kb on + strand, within HP15_2386at 2516.402 kb on + strand, within HP15_2386at 2516.402 kb on + strand, within HP15_2386at 2516.410 kb on - strand, within HP15_2386at 2516.460 kb on + strand, within HP15_2386at 2516.461 kb on + strand, within HP15_2386at 2516.493 kb on + strand, within HP15_2386at 2516.510 kb on - strand, within HP15_2386at 2516.605 kb on + strand, within HP15_2386at 2516.613 kb on - strand, within HP15_2386at 2516.619 kb on + strand, within HP15_2386at 2516.736 kb on - strand, within HP15_2386at 2516.761 kb on + strand, within HP15_2386at 2516.793 kb on - strand, within HP15_2386at 2516.839 kb on - strand, within HP15_2386at 2516.891 kb on + strand, within HP15_2386at 2517.067 kb on + strand, within HP15_2386at 2517.081 kb on + strand, within HP15_2386at 2517.082 kb on - strand, within HP15_2386at 2517.157 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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2,514,058 - -1.0
2,514,098 + -5.3
2,514,108 - -2.9
2,514,195 + -2.8
2,514,217 - -0.6
2,514,240 + -0.1
2,514,240 - -2.2
2,514,253 - -1.7
2,514,355 - -0.9
2,515,026 - +0.7
2,515,036 - +0.4
2,515,046 - -0.5
2,515,084 - -0.3
2,515,181 + HP15_2385 0.11 +0.4
2,515,249 + HP15_2385 0.17 -1.1
2,515,317 + HP15_2385 0.23 +0.7
2,515,416 + HP15_2385 0.31 -0.7
2,515,456 - HP15_2385 0.35 +0.2
2,515,529 + HP15_2385 0.41 +0.4
2,515,571 + HP15_2385 0.44 +0.2
2,515,571 + HP15_2385 0.44 +0.3
2,515,670 - HP15_2385 0.53 -1.0
2,515,746 + HP15_2385 0.59 -0.6
2,515,755 - HP15_2385 0.60 +0.1
2,515,756 + HP15_2385 0.60 -0.2
2,515,773 + HP15_2385 0.62 -1.8
2,515,775 + HP15_2385 0.62 +0.5
2,515,832 + HP15_2385 0.67 +1.1
2,515,832 + HP15_2385 0.67 +0.2
2,515,832 + HP15_2385 0.67 -0.6
2,515,832 + +1.0
2,515,832 + HP15_2385 0.67 -0.6
2,515,840 - HP15_2385 0.67 -0.9
2,515,916 - HP15_2385 0.74 +0.2
2,515,924 + HP15_2385 0.74 -0.3
2,516,001 - HP15_2385 0.81 +0.2
2,516,051 - HP15_2385 0.85 -0.2
2,516,180 + +0.4
2,516,195 + -2.8
2,516,402 + HP15_2386 0.16 -0.5
2,516,402 + HP15_2386 0.16 -1.3
2,516,402 + HP15_2386 0.16 +0.6
2,516,410 - HP15_2386 0.17 -1.3
2,516,460 + HP15_2386 0.22 -1.9
2,516,461 + HP15_2386 0.22 -0.4
2,516,493 + HP15_2386 0.25 -1.1
2,516,510 - HP15_2386 0.27 -1.1
2,516,605 + HP15_2386 0.37 -3.5
2,516,613 - HP15_2386 0.38 -0.6
2,516,619 + HP15_2386 0.38 -2.4
2,516,736 - HP15_2386 0.51 -0.6
2,516,761 + HP15_2386 0.53 -3.3
2,516,793 - HP15_2386 0.57 -1.8
2,516,839 - HP15_2386 0.61 +0.3
2,516,891 + HP15_2386 0.67 -1.0
2,517,067 + HP15_2386 0.85 -3.3
2,517,081 + HP15_2386 0.87 -1.8
2,517,082 - HP15_2386 0.87 -0.7
2,517,157 + +0.3

Or see this region's nucleotide sequence