Strain Fitness in Marinobacter adhaerens HP15 around HP15_2384

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2383 and HP15_2384 are separated by 208 nucleotidesHP15_2384 and HP15_2385 are separated by 51 nucleotides HP15_2383: HP15_2383 - nucleotide sugar epimerase/dehydratase, at 2,512,425 to 2,514,233 _2383 HP15_2384: HP15_2384 - sugar transferase, at 2,514,442 to 2,514,999 _2384 HP15_2385: HP15_2385 - UDP-glucose 6-dehydrogenase, at 2,515,051 to 2,516,223 _2385 Position (kb) 2514 2515Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2513.488 kb on - strand, within HP15_2383at 2513.514 kb on - strand, within HP15_2383at 2513.514 kb on - strand, within HP15_2383at 2513.524 kb on - strand, within HP15_2383at 2513.524 kb on - strand, within HP15_2383at 2513.542 kb on - strand, within HP15_2383at 2513.547 kb on - strand, within HP15_2383at 2513.554 kb on - strand, within HP15_2383at 2513.689 kb on + strand, within HP15_2383at 2513.689 kb on - strand, within HP15_2383at 2513.695 kb on + strand, within HP15_2383at 2513.733 kb on + strand, within HP15_2383at 2513.739 kb on + strand, within HP15_2383at 2513.777 kb on + strand, within HP15_2383at 2513.798 kb on + strand, within HP15_2383at 2513.806 kb on + strand, within HP15_2383at 2513.808 kb on + strand, within HP15_2383at 2513.857 kb on + strand, within HP15_2383at 2513.876 kb on + strand, within HP15_2383at 2513.876 kb on + strand, within HP15_2383at 2513.975 kb on - strand, within HP15_2383at 2514.000 kb on + strand, within HP15_2383at 2514.000 kb on + strand, within HP15_2383at 2514.001 kb on + strand, within HP15_2383at 2514.006 kb on + strand, within HP15_2383at 2514.008 kb on + strand, within HP15_2383at 2514.014 kb on - strand, within HP15_2383at 2514.058 kb on - strandat 2514.098 kb on + strandat 2514.108 kb on - strandat 2514.195 kb on + strandat 2514.217 kb on - strandat 2514.240 kb on + strandat 2514.240 kb on - strandat 2514.253 kb on - strandat 2514.355 kb on - strandat 2515.026 kb on - strandat 2515.036 kb on - strandat 2515.046 kb on - strandat 2515.084 kb on - strandat 2515.181 kb on + strand, within HP15_2385at 2515.249 kb on + strand, within HP15_2385at 2515.317 kb on + strand, within HP15_2385at 2515.416 kb on + strand, within HP15_2385at 2515.456 kb on - strand, within HP15_2385at 2515.529 kb on + strand, within HP15_2385at 2515.571 kb on + strand, within HP15_2385at 2515.571 kb on + strand, within HP15_2385at 2515.670 kb on - strand, within HP15_2385at 2515.746 kb on + strand, within HP15_2385at 2515.755 kb on - strand, within HP15_2385at 2515.756 kb on + strand, within HP15_2385at 2515.773 kb on + strand, within HP15_2385at 2515.775 kb on + strand, within HP15_2385at 2515.832 kb on + strand, within HP15_2385at 2515.832 kb on + strand, within HP15_2385at 2515.832 kb on + strand, within HP15_2385at 2515.832 kb on + strandat 2515.832 kb on + strand, within HP15_2385at 2515.840 kb on - strand, within HP15_2385at 2515.916 kb on - strand, within HP15_2385at 2515.924 kb on + strand, within HP15_2385

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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2,513,488 - HP15_2383 0.59 -3.0
2,513,514 - HP15_2383 0.60 -4.7
2,513,514 - HP15_2383 0.60 -2.0
2,513,524 - HP15_2383 0.61 -2.6
2,513,524 - HP15_2383 0.61 -3.6
2,513,542 - HP15_2383 0.62 -3.4
2,513,547 - HP15_2383 0.62 -2.2
2,513,554 - HP15_2383 0.62 -1.2
2,513,689 + HP15_2383 0.70 -1.4
2,513,689 - HP15_2383 0.70 -2.6
2,513,695 + HP15_2383 0.70 -2.0
2,513,733 + HP15_2383 0.72 -3.3
2,513,739 + HP15_2383 0.73 -1.7
2,513,777 + HP15_2383 0.75 -0.8
2,513,798 + HP15_2383 0.76 -3.1
2,513,806 + HP15_2383 0.76 -1.9
2,513,808 + HP15_2383 0.76 -1.3
2,513,857 + HP15_2383 0.79 -2.8
2,513,876 + HP15_2383 0.80 -3.5
2,513,876 + HP15_2383 0.80 -1.8
2,513,975 - HP15_2383 0.86 -0.9
2,514,000 + HP15_2383 0.87 -3.9
2,514,000 + HP15_2383 0.87 -1.6
2,514,001 + HP15_2383 0.87 -1.6
2,514,006 + HP15_2383 0.87 -3.9
2,514,008 + HP15_2383 0.88 -1.2
2,514,014 - HP15_2383 0.88 -2.9
2,514,058 - -1.0
2,514,098 + -5.3
2,514,108 - -2.9
2,514,195 + -2.8
2,514,217 - -0.6
2,514,240 + -0.1
2,514,240 - -2.2
2,514,253 - -1.7
2,514,355 - -0.9
2,515,026 - +0.7
2,515,036 - +0.4
2,515,046 - -0.5
2,515,084 - -0.3
2,515,181 + HP15_2385 0.11 +0.4
2,515,249 + HP15_2385 0.17 -1.1
2,515,317 + HP15_2385 0.23 +0.7
2,515,416 + HP15_2385 0.31 -0.7
2,515,456 - HP15_2385 0.35 +0.2
2,515,529 + HP15_2385 0.41 +0.4
2,515,571 + HP15_2385 0.44 +0.2
2,515,571 + HP15_2385 0.44 +0.3
2,515,670 - HP15_2385 0.53 -1.0
2,515,746 + HP15_2385 0.59 -0.6
2,515,755 - HP15_2385 0.60 +0.1
2,515,756 + HP15_2385 0.60 -0.2
2,515,773 + HP15_2385 0.62 -1.8
2,515,775 + HP15_2385 0.62 +0.5
2,515,832 + HP15_2385 0.67 +1.1
2,515,832 + HP15_2385 0.67 +0.2
2,515,832 + HP15_2385 0.67 -0.6
2,515,832 + +1.0
2,515,832 + HP15_2385 0.67 -0.6
2,515,840 - HP15_2385 0.67 -0.9
2,515,916 - HP15_2385 0.74 +0.2
2,515,924 + HP15_2385 0.74 -0.3

Or see this region's nucleotide sequence