Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2383 and HP15_2384 are separated by 208 nucleotides HP15_2384 and HP15_2385 are separated by 51 nucleotides
HP15_2383: HP15_2383 - nucleotide sugar epimerase/dehydratase, at 2,512,425 to 2,514,233
_2383
HP15_2384: HP15_2384 - sugar transferase, at 2,514,442 to 2,514,999
_2384
HP15_2385: HP15_2385 - UDP-glucose 6-dehydrogenase, at 2,515,051 to 2,516,223
_2385
Position (kb)
2514
2515 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2513.488 kb on - strand, within HP15_2383 at 2513.514 kb on - strand, within HP15_2383 at 2513.514 kb on - strand, within HP15_2383 at 2513.524 kb on - strand, within HP15_2383 at 2513.524 kb on - strand, within HP15_2383 at 2513.542 kb on - strand, within HP15_2383 at 2513.547 kb on - strand, within HP15_2383 at 2513.554 kb on - strand, within HP15_2383 at 2513.689 kb on + strand, within HP15_2383 at 2513.689 kb on - strand, within HP15_2383 at 2513.695 kb on + strand, within HP15_2383 at 2513.733 kb on + strand, within HP15_2383 at 2513.739 kb on + strand, within HP15_2383 at 2513.777 kb on + strand, within HP15_2383 at 2513.798 kb on + strand, within HP15_2383 at 2513.806 kb on + strand, within HP15_2383 at 2513.808 kb on + strand, within HP15_2383 at 2513.857 kb on + strand, within HP15_2383 at 2513.876 kb on + strand, within HP15_2383 at 2513.876 kb on + strand, within HP15_2383 at 2513.975 kb on - strand, within HP15_2383 at 2514.000 kb on + strand, within HP15_2383 at 2514.000 kb on + strand, within HP15_2383 at 2514.001 kb on + strand, within HP15_2383 at 2514.006 kb on + strand, within HP15_2383 at 2514.008 kb on + strand, within HP15_2383 at 2514.014 kb on - strand, within HP15_2383 at 2514.058 kb on - strand at 2514.098 kb on + strand at 2514.108 kb on - strand at 2514.195 kb on + strand at 2514.217 kb on - strand at 2514.240 kb on + strand at 2514.240 kb on - strand at 2514.253 kb on - strand at 2514.355 kb on - strand at 2515.026 kb on - strand at 2515.036 kb on - strand at 2515.046 kb on - strand at 2515.084 kb on - strand at 2515.181 kb on + strand, within HP15_2385 at 2515.249 kb on + strand, within HP15_2385 at 2515.317 kb on + strand, within HP15_2385 at 2515.416 kb on + strand, within HP15_2385 at 2515.456 kb on - strand, within HP15_2385 at 2515.529 kb on + strand, within HP15_2385 at 2515.571 kb on + strand, within HP15_2385 at 2515.571 kb on + strand, within HP15_2385 at 2515.670 kb on - strand, within HP15_2385 at 2515.746 kb on + strand, within HP15_2385 at 2515.755 kb on - strand, within HP15_2385 at 2515.756 kb on + strand, within HP15_2385 at 2515.773 kb on + strand, within HP15_2385 at 2515.775 kb on + strand, within HP15_2385 at 2515.832 kb on + strand, within HP15_2385 at 2515.832 kb on + strand, within HP15_2385 at 2515.832 kb on + strand, within HP15_2385 at 2515.832 kb on + strand at 2515.832 kb on + strand, within HP15_2385 at 2515.840 kb on - strand, within HP15_2385 at 2515.916 kb on - strand, within HP15_2385 at 2515.924 kb on + strand, within HP15_2385
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 2,513,488 - HP15_2383 0.59 -3.0 2,513,514 - HP15_2383 0.60 -4.7 2,513,514 - HP15_2383 0.60 -2.0 2,513,524 - HP15_2383 0.61 -2.6 2,513,524 - HP15_2383 0.61 -3.6 2,513,542 - HP15_2383 0.62 -3.4 2,513,547 - HP15_2383 0.62 -2.2 2,513,554 - HP15_2383 0.62 -1.2 2,513,689 + HP15_2383 0.70 -1.4 2,513,689 - HP15_2383 0.70 -2.6 2,513,695 + HP15_2383 0.70 -2.0 2,513,733 + HP15_2383 0.72 -3.3 2,513,739 + HP15_2383 0.73 -1.7 2,513,777 + HP15_2383 0.75 -0.8 2,513,798 + HP15_2383 0.76 -3.1 2,513,806 + HP15_2383 0.76 -1.9 2,513,808 + HP15_2383 0.76 -1.3 2,513,857 + HP15_2383 0.79 -2.8 2,513,876 + HP15_2383 0.80 -3.5 2,513,876 + HP15_2383 0.80 -1.8 2,513,975 - HP15_2383 0.86 -0.9 2,514,000 + HP15_2383 0.87 -3.9 2,514,000 + HP15_2383 0.87 -1.6 2,514,001 + HP15_2383 0.87 -1.6 2,514,006 + HP15_2383 0.87 -3.9 2,514,008 + HP15_2383 0.88 -1.2 2,514,014 - HP15_2383 0.88 -2.9 2,514,058 - -1.0 2,514,098 + -5.3 2,514,108 - -2.9 2,514,195 + -2.8 2,514,217 - -0.6 2,514,240 + -0.1 2,514,240 - -2.2 2,514,253 - -1.7 2,514,355 - -0.9 2,515,026 - +0.7 2,515,036 - +0.4 2,515,046 - -0.5 2,515,084 - -0.3 2,515,181 + HP15_2385 0.11 +0.4 2,515,249 + HP15_2385 0.17 -1.1 2,515,317 + HP15_2385 0.23 +0.7 2,515,416 + HP15_2385 0.31 -0.7 2,515,456 - HP15_2385 0.35 +0.2 2,515,529 + HP15_2385 0.41 +0.4 2,515,571 + HP15_2385 0.44 +0.2 2,515,571 + HP15_2385 0.44 +0.3 2,515,670 - HP15_2385 0.53 -1.0 2,515,746 + HP15_2385 0.59 -0.6 2,515,755 - HP15_2385 0.60 +0.1 2,515,756 + HP15_2385 0.60 -0.2 2,515,773 + HP15_2385 0.62 -1.8 2,515,775 + HP15_2385 0.62 +0.5 2,515,832 + HP15_2385 0.67 +1.1 2,515,832 + HP15_2385 0.67 +0.2 2,515,832 + HP15_2385 0.67 -0.6 2,515,832 + +1.0 2,515,832 + HP15_2385 0.67 -0.6 2,515,840 - HP15_2385 0.67 -0.9 2,515,916 - HP15_2385 0.74 +0.2 2,515,924 + HP15_2385 0.74 -0.3
Or see this region's nucleotide sequence