Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1525 and HP15_1527 are separated by 54 nucleotides HP15_1527 and HP15_1526 overlap by 24 nucleotides HP15_1526 and HP15_1528 are separated by 59 nucleotides HP15_1528 and HP15_1529 are separated by 42 nucleotides
HP15_1525: HP15_1525 - succinyl-CoA synthetase, alpha subunit, at 1,607,786 to 1,608,658
_1525
HP15_1527: HP15_1527 - hypothetical protein, at 1,608,713 to 1,608,841
_1527
HP15_1526: HP15_1526 - tryptophanyl-tRNA synthetase, at 1,608,818 to 1,609,993
_1526
HP15_1528: HP15_1528 - chromosome segregation and condensation protein ScpA, at 1,610,053 to 1,610,886
_1528
HP15_1529: HP15_1529 - transcriptional regulator, at 1,610,929 to 1,611,567
_1529
Position (kb) 1608
1609
1610 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1610.195 kb on + strand, within HP15_1528 at 1610.203 kb on - strand, within HP15_1528 at 1610.532 kb on - strand, within HP15_1528 at 1610.564 kb on + strand, within HP15_1528 at 1610.798 kb on + strand, within HP15_1528 at 1610.808 kb on + strand at 1610.946 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 1,610,195 + HP15_1528 0.17 -0.5 1,610,203 - HP15_1528 0.18 +0.2 1,610,532 - HP15_1528 0.57 -0.6 1,610,564 + HP15_1528 0.61 +2.2 1,610,798 + HP15_1528 0.89 -2.8 1,610,808 + +0.1 1,610,946 + -0.3
Or see this region's nucleotide sequence