Strain Fitness in Marinobacter adhaerens HP15 around HP15_1067

Experiment: Control growth in Pro99_seawater

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1066 and HP15_1067 are separated by 163 nucleotidesHP15_1067 and HP15_1068 are separated by 46 nucleotides HP15_1066: HP15_1066 - secreted protein containing DUF1329, at 1,091,555 to 1,092,943 _1066 HP15_1067: HP15_1067 - BNR/Asp-box repeat protein, at 1,093,107 to 1,094,240 _1067 HP15_1068: HP15_1068 - transporter, at 1,094,287 to 1,096,671 _1068 Position (kb) 1093 1094 1095Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1092.224 kb on + strand, within HP15_1066at 1092.227 kb on - strand, within HP15_1066at 1092.301 kb on - strand, within HP15_1066at 1092.309 kb on + strand, within HP15_1066at 1092.377 kb on + strand, within HP15_1066at 1092.378 kb on + strand, within HP15_1066at 1092.458 kb on + strand, within HP15_1066at 1092.675 kb on + strand, within HP15_1066at 1092.747 kb on + strand, within HP15_1066at 1092.776 kb on + strand, within HP15_1066at 1092.814 kb on + strandat 1092.822 kb on - strandat 1092.960 kb on - strandat 1093.064 kb on + strandat 1093.064 kb on + strandat 1093.072 kb on - strandat 1093.140 kb on - strandat 1093.148 kb on + strandat 1093.328 kb on + strand, within HP15_1067at 1093.388 kb on - strand, within HP15_1067at 1093.574 kb on + strand, within HP15_1067at 1093.724 kb on + strand, within HP15_1067at 1093.907 kb on + strand, within HP15_1067at 1093.907 kb on + strand, within HP15_1067at 1093.915 kb on - strand, within HP15_1067at 1093.915 kb on - strand, within HP15_1067at 1093.917 kb on + strand, within HP15_1067at 1093.917 kb on + strand, within HP15_1067at 1093.920 kb on - strand, within HP15_1067at 1093.920 kb on - strand, within HP15_1067at 1093.925 kb on - strand, within HP15_1067at 1093.939 kb on + strand, within HP15_1067at 1094.087 kb on + strand, within HP15_1067at 1094.131 kb on - strandat 1094.289 kb on + strandat 1094.416 kb on + strandat 1094.429 kb on - strandat 1094.438 kb on - strandat 1094.537 kb on - strand, within HP15_1068at 1094.555 kb on + strand, within HP15_1068at 1094.555 kb on + strand, within HP15_1068at 1094.555 kb on + strand, within HP15_1068at 1094.578 kb on + strand, within HP15_1068at 1094.597 kb on + strand, within HP15_1068at 1094.597 kb on + strand, within HP15_1068at 1094.615 kb on - strand, within HP15_1068at 1094.639 kb on - strand, within HP15_1068at 1094.684 kb on + strand, within HP15_1068at 1094.985 kb on + strand, within HP15_1068at 1095.063 kb on + strand, within HP15_1068at 1095.179 kb on - strand, within HP15_1068at 1095.219 kb on - strand, within HP15_1068at 1095.226 kb on - strand, within HP15_1068

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
remove
1,092,224 + HP15_1066 0.48 -0.5
1,092,227 - HP15_1066 0.48 -1.0
1,092,301 - HP15_1066 0.54 +0.2
1,092,309 + HP15_1066 0.54 -0.6
1,092,377 + HP15_1066 0.59 +1.8
1,092,378 + HP15_1066 0.59 -0.8
1,092,458 + HP15_1066 0.65 -0.3
1,092,675 + HP15_1066 0.81 +0.0
1,092,747 + HP15_1066 0.86 +0.2
1,092,776 + HP15_1066 0.88 -0.1
1,092,814 + +0.4
1,092,822 - +0.2
1,092,960 - -0.2
1,093,064 + +0.1
1,093,064 + -0.9
1,093,072 - +0.8
1,093,140 - -1.1
1,093,148 + -0.3
1,093,328 + HP15_1067 0.19 -1.6
1,093,388 - HP15_1067 0.25 +0.2
1,093,574 + HP15_1067 0.41 +0.1
1,093,724 + HP15_1067 0.54 -3.2
1,093,907 + HP15_1067 0.71 -1.2
1,093,907 + HP15_1067 0.71 +0.1
1,093,915 - HP15_1067 0.71 +0.3
1,093,915 - HP15_1067 0.71 +0.4
1,093,917 + HP15_1067 0.71 -0.6
1,093,917 + HP15_1067 0.71 -0.4
1,093,920 - HP15_1067 0.72 -0.1
1,093,920 - HP15_1067 0.72 +1.1
1,093,925 - HP15_1067 0.72 -1.2
1,093,939 + HP15_1067 0.73 -1.2
1,094,087 + HP15_1067 0.86 -0.7
1,094,131 - +0.3
1,094,289 + -0.2
1,094,416 + +0.1
1,094,429 - -1.0
1,094,438 - -1.0
1,094,537 - HP15_1068 0.10 +0.4
1,094,555 + HP15_1068 0.11 +0.0
1,094,555 + HP15_1068 0.11 -0.0
1,094,555 + HP15_1068 0.11 -0.6
1,094,578 + HP15_1068 0.12 -1.5
1,094,597 + HP15_1068 0.13 +2.3
1,094,597 + HP15_1068 0.13 +1.0
1,094,615 - HP15_1068 0.14 -0.8
1,094,639 - HP15_1068 0.15 +1.6
1,094,684 + HP15_1068 0.17 -0.0
1,094,985 + HP15_1068 0.29 -1.2
1,095,063 + HP15_1068 0.33 -0.0
1,095,179 - HP15_1068 0.37 +0.1
1,095,219 - HP15_1068 0.39 -0.2
1,095,226 - HP15_1068 0.39 -1.4

Or see this region's nucleotide sequence