Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS15480

Experiment: diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS15470 and BBR_RS15475 are separated by 40 nucleotidesBBR_RS15475 and BBR_RS15480 are separated by 191 nucleotidesBBR_RS15480 and BBR_RS15485 are separated by 171 nucleotides BBR_RS15470: BBR_RS15470 - LysR family transcriptional regulator, at 1,241,216 to 1,242,139 _RS15470 BBR_RS15475: BBR_RS15475 - Histidinol-phosphatase (EC 3.1.3.15) (from data), at 1,242,180 to 1,242,809 _RS15475 BBR_RS15480: BBR_RS15480 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 1,243,001 to 1,244,764 _RS15480 BBR_RS15485: BBR_RS15485 - ABC transporter ATP-binding protein, at 1,244,936 to 1,246,537 _RS15485 Position (kb) 1243 1244 1245Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1242.013 kb on + strand, within BBR_RS15470at 1242.013 kb on + strand, within BBR_RS15470at 1242.041 kb on + strand, within BBR_RS15470at 1242.041 kb on + strand, within BBR_RS15470at 1242.052 kb on + strandat 1242.054 kb on - strandat 1242.200 kb on + strandat 1242.268 kb on + strand, within BBR_RS15475at 1242.276 kb on + strand, within BBR_RS15475at 1242.315 kb on + strand, within BBR_RS15475at 1242.323 kb on - strand, within BBR_RS15475at 1242.391 kb on + strand, within BBR_RS15475at 1242.399 kb on + strand, within BBR_RS15475at 1242.405 kb on - strand, within BBR_RS15475at 1242.460 kb on + strand, within BBR_RS15475at 1242.460 kb on - strand, within BBR_RS15475at 1242.466 kb on - strand, within BBR_RS15475at 1242.487 kb on - strand, within BBR_RS15475at 1242.540 kb on - strand, within BBR_RS15475at 1242.547 kb on + strand, within BBR_RS15475at 1242.547 kb on + strand, within BBR_RS15475at 1242.555 kb on - strand, within BBR_RS15475at 1242.557 kb on - strand, within BBR_RS15475at 1242.595 kb on - strand, within BBR_RS15475at 1242.635 kb on - strand, within BBR_RS15475at 1242.744 kb on + strand, within BBR_RS15475at 1242.744 kb on + strand, within BBR_RS15475at 1242.756 kb on - strandat 1242.853 kb on - strandat 1242.993 kb on + strandat 1243.001 kb on - strandat 1243.040 kb on + strandat 1243.177 kb on + strandat 1243.200 kb on + strand, within BBR_RS15480at 1243.241 kb on - strand, within BBR_RS15480at 1243.246 kb on - strand, within BBR_RS15480at 1243.315 kb on - strand, within BBR_RS15480at 1243.349 kb on - strand, within BBR_RS15480at 1243.351 kb on - strand, within BBR_RS15480at 1243.397 kb on - strand, within BBR_RS15480at 1243.397 kb on - strand, within BBR_RS15480at 1243.422 kb on + strand, within BBR_RS15480at 1243.430 kb on - strand, within BBR_RS15480at 1243.430 kb on - strand, within BBR_RS15480at 1243.517 kb on - strand, within BBR_RS15480at 1243.523 kb on - strand, within BBR_RS15480at 1243.570 kb on - strand, within BBR_RS15480at 1243.678 kb on - strand, within BBR_RS15480at 1243.701 kb on - strand, within BBR_RS15480at 1243.713 kb on + strand, within BBR_RS15480at 1243.713 kb on + strand, within BBR_RS15480at 1243.713 kb on + strand, within BBR_RS15480at 1243.721 kb on - strand, within BBR_RS15480at 1243.721 kb on - strand, within BBR_RS15480at 1243.721 kb on - strand, within BBR_RS15480at 1243.721 kb on - strand, within BBR_RS15480at 1243.721 kb on - strand, within BBR_RS15480at 1243.721 kb on - strand, within BBR_RS15480at 1243.726 kb on - strand, within BBR_RS15480at 1243.729 kb on - strand, within BBR_RS15480at 1243.731 kb on - strand, within BBR_RS15480at 1243.731 kb on - strand, within BBR_RS15480at 1243.731 kb on - strand, within BBR_RS15480at 1243.731 kb on - strand, within BBR_RS15480at 1243.746 kb on + strand, within BBR_RS15480at 1243.754 kb on - strand, within BBR_RS15480at 1243.838 kb on + strand, within BBR_RS15480at 1243.865 kb on - strand, within BBR_RS15480at 1243.880 kb on - strand, within BBR_RS15480at 1243.888 kb on - strand, within BBR_RS15480at 1244.025 kb on + strand, within BBR_RS15480at 1244.033 kb on - strand, within BBR_RS15480at 1244.212 kb on + strand, within BBR_RS15480at 1244.230 kb on - strand, within BBR_RS15480at 1244.307 kb on + strand, within BBR_RS15480at 1244.322 kb on + strand, within BBR_RS15480at 1244.330 kb on - strand, within BBR_RS15480at 1244.365 kb on + strand, within BBR_RS15480at 1244.365 kb on + strand, within BBR_RS15480at 1244.466 kb on - strand, within BBR_RS15480at 1244.533 kb on - strand, within BBR_RS15480at 1244.596 kb on - strandat 1244.626 kb on + strandat 1244.629 kb on - strandat 1244.664 kb on + strandat 1244.664 kb on + strandat 1244.664 kb on + strandat 1244.664 kb on + strandat 1244.672 kb on - strandat 1244.672 kb on - strandat 1244.672 kb on - strandat 1244.716 kb on - strandat 1244.762 kb on - strandat 1244.806 kb on - strandat 1244.890 kb on + strandat 1244.914 kb on - strandat 1244.916 kb on - strandat 1244.961 kb on - strandat 1244.990 kb on - strandat 1244.992 kb on - strandat 1245.010 kb on + strandat 1245.010 kb on + strandat 1245.018 kb on - strandat 1245.062 kb on + strandat 1245.075 kb on - strandat 1245.108 kb on + strand, within BBR_RS15485at 1245.127 kb on + strand, within BBR_RS15485at 1245.140 kb on + strand, within BBR_RS15485at 1245.156 kb on + strand, within BBR_RS15485at 1245.255 kb on + strand, within BBR_RS15485at 1245.274 kb on + strand, within BBR_RS15485at 1245.281 kb on + strand, within BBR_RS15485at 1245.333 kb on + strand, within BBR_RS15485at 1245.375 kb on + strand, within BBR_RS15485at 1245.700 kb on - strand, within BBR_RS15485at 1245.738 kb on - strand, within BBR_RS15485at 1245.759 kb on + strand, within BBR_RS15485

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6
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1,242,013 + BBR_RS15470 0.86 -0.9
1,242,013 + BBR_RS15470 0.86 +0.4
1,242,041 + BBR_RS15470 0.89 +1.4
1,242,041 + BBR_RS15470 0.89 +0.9
1,242,052 + -0.6
1,242,054 - -1.1
1,242,200 + -0.4
1,242,268 + BBR_RS15475 0.14 +0.9
1,242,276 + BBR_RS15475 0.15 +4.0
1,242,315 + BBR_RS15475 0.21 +0.4
1,242,323 - BBR_RS15475 0.23 +0.4
1,242,391 + BBR_RS15475 0.33 +1.2
1,242,399 + BBR_RS15475 0.35 -1.0
1,242,405 - BBR_RS15475 0.36 -0.1
1,242,460 + BBR_RS15475 0.44 +2.3
1,242,460 - BBR_RS15475 0.44 +0.2
1,242,466 - BBR_RS15475 0.45 +1.2
1,242,487 - BBR_RS15475 0.49 +1.2
1,242,540 - BBR_RS15475 0.57 +2.2
1,242,547 + BBR_RS15475 0.58 +0.9
1,242,547 + BBR_RS15475 0.58 -0.6
1,242,555 - BBR_RS15475 0.60 +0.2
1,242,557 - BBR_RS15475 0.60 -2.1
1,242,595 - BBR_RS15475 0.66 +1.3
1,242,635 - BBR_RS15475 0.72 -0.7
1,242,744 + BBR_RS15475 0.90 +3.6
1,242,744 + BBR_RS15475 0.90 +3.7
1,242,756 - +0.3
1,242,853 - +0.7
1,242,993 + +1.1
1,243,001 - -1.5
1,243,040 + +2.5
1,243,177 + +4.3
1,243,200 + BBR_RS15480 0.11 +2.3
1,243,241 - BBR_RS15480 0.14 -0.4
1,243,246 - BBR_RS15480 0.14 +1.7
1,243,315 - BBR_RS15480 0.18 +1.8
1,243,349 - BBR_RS15480 0.20 -0.5
1,243,351 - BBR_RS15480 0.20 +0.5
1,243,397 - BBR_RS15480 0.22 -0.6
1,243,397 - BBR_RS15480 0.22 -2.1
1,243,422 + BBR_RS15480 0.24 +1.1
1,243,430 - BBR_RS15480 0.24 -1.0
1,243,430 - BBR_RS15480 0.24 -0.8
1,243,517 - BBR_RS15480 0.29 +2.6
1,243,523 - BBR_RS15480 0.30 -0.3
1,243,570 - BBR_RS15480 0.32 +1.6
1,243,678 - BBR_RS15480 0.38 -0.1
1,243,701 - BBR_RS15480 0.40 -3.0
1,243,713 + BBR_RS15480 0.40 -1.5
1,243,713 + BBR_RS15480 0.40 +1.4
1,243,713 + BBR_RS15480 0.40 +1.7
1,243,721 - BBR_RS15480 0.41 +2.0
1,243,721 - BBR_RS15480 0.41 -0.7
1,243,721 - BBR_RS15480 0.41 -2.6
1,243,721 - BBR_RS15480 0.41 -0.5
1,243,721 - BBR_RS15480 0.41 +1.5
1,243,721 - BBR_RS15480 0.41 -1.1
1,243,726 - BBR_RS15480 0.41 -2.7
1,243,729 - BBR_RS15480 0.41 +2.2
1,243,731 - BBR_RS15480 0.41 -1.1
1,243,731 - BBR_RS15480 0.41 -1.2
1,243,731 - BBR_RS15480 0.41 -0.2
1,243,731 - BBR_RS15480 0.41 +2.9
1,243,746 + BBR_RS15480 0.42 -0.2
1,243,754 - BBR_RS15480 0.43 -0.2
1,243,838 + BBR_RS15480 0.47 +0.5
1,243,865 - BBR_RS15480 0.49 +0.2
1,243,880 - BBR_RS15480 0.50 -1.1
1,243,888 - BBR_RS15480 0.50 -0.3
1,244,025 + BBR_RS15480 0.58 -0.1
1,244,033 - BBR_RS15480 0.59 +1.3
1,244,212 + BBR_RS15480 0.69 +3.0
1,244,230 - BBR_RS15480 0.70 +1.5
1,244,307 + BBR_RS15480 0.74 +1.4
1,244,322 + BBR_RS15480 0.75 -0.6
1,244,330 - BBR_RS15480 0.75 -2.4
1,244,365 + BBR_RS15480 0.77 -0.4
1,244,365 + BBR_RS15480 0.77 +3.0
1,244,466 - BBR_RS15480 0.83 -0.6
1,244,533 - BBR_RS15480 0.87 -0.0
1,244,596 - -0.8
1,244,626 + +0.4
1,244,629 - +1.9
1,244,664 + +3.0
1,244,664 + -1.5
1,244,664 + -0.4
1,244,664 + -1.6
1,244,672 - -0.5
1,244,672 - -1.5
1,244,672 - +0.1
1,244,716 - -0.3
1,244,762 - +0.5
1,244,806 - +2.5
1,244,890 + +1.0
1,244,914 - +1.5
1,244,916 - -0.7
1,244,961 - -0.6
1,244,990 - +0.9
1,244,992 - +0.1
1,245,010 + +1.4
1,245,010 + +0.5
1,245,018 - +1.2
1,245,062 + -1.5
1,245,075 - -1.6
1,245,108 + BBR_RS15485 0.11 +0.9
1,245,127 + BBR_RS15485 0.12 +2.5
1,245,140 + BBR_RS15485 0.13 +1.4
1,245,156 + BBR_RS15485 0.14 +1.2
1,245,255 + BBR_RS15485 0.20 +1.4
1,245,274 + BBR_RS15485 0.21 -0.6
1,245,281 + BBR_RS15485 0.22 +3.2
1,245,333 + BBR_RS15485 0.25 +3.2
1,245,375 + BBR_RS15485 0.27 -1.1
1,245,700 - BBR_RS15485 0.48 +2.5
1,245,738 - BBR_RS15485 0.50 +0.5
1,245,759 + BBR_RS15485 0.51 -1.7

Or see this region's nucleotide sequence