Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS14035

Experiment: diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS14030 and BBR_RS14035 overlap by 4 nucleotidesBBR_RS14035 and BBR_RS14040 are separated by 123 nucleotidesBBR_RS14040 and BBR_RS14045 are separated by 289 nucleotides BBR_RS14030: BBR_RS14030 - DNA repair protein RecN, at 924,030 to 925,880 _RS14030 BBR_RS14035: BBR_RS14035 - HAD family phosphatase, at 925,877 to 926,524 _RS14035 BBR_RS14040: BBR_RS14040 - GNAT family N-acetyltransferase, at 926,648 to 927,123 _RS14040 BBR_RS14045: BBR_RS14045 - GntR family transcriptional regulator, at 927,413 to 927,787 _RS14045 Position (kb) 925 926 927Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 924.888 kb on + strand, within BBR_RS14030at 924.977 kb on + strand, within BBR_RS14030at 925.012 kb on - strand, within BBR_RS14030at 925.014 kb on + strand, within BBR_RS14030at 925.015 kb on - strand, within BBR_RS14030at 925.064 kb on + strand, within BBR_RS14030at 925.091 kb on - strand, within BBR_RS14030at 925.149 kb on + strand, within BBR_RS14030at 925.185 kb on + strand, within BBR_RS14030at 925.195 kb on - strand, within BBR_RS14030at 925.195 kb on - strand, within BBR_RS14030at 925.289 kb on + strand, within BBR_RS14030at 925.289 kb on + strand, within BBR_RS14030at 925.290 kb on + strand, within BBR_RS14030at 925.290 kb on - strand, within BBR_RS14030at 925.332 kb on - strand, within BBR_RS14030at 925.398 kb on - strand, within BBR_RS14030at 925.567 kb on + strand, within BBR_RS14030at 925.567 kb on + strand, within BBR_RS14030at 925.567 kb on + strand, within BBR_RS14030at 925.604 kb on - strand, within BBR_RS14030at 925.616 kb on + strand, within BBR_RS14030at 925.624 kb on - strand, within BBR_RS14030at 925.703 kb on + strandat 925.712 kb on + strandat 925.804 kb on + strandat 925.822 kb on - strandat 925.836 kb on + strandat 925.844 kb on - strandat 925.887 kb on - strandat 925.970 kb on + strand, within BBR_RS14035at 926.007 kb on + strand, within BBR_RS14035at 926.015 kb on - strand, within BBR_RS14035at 926.033 kb on + strand, within BBR_RS14035at 926.041 kb on - strand, within BBR_RS14035at 926.043 kb on - strand, within BBR_RS14035at 926.043 kb on - strand, within BBR_RS14035at 926.057 kb on + strand, within BBR_RS14035at 926.075 kb on - strand, within BBR_RS14035at 926.106 kb on + strand, within BBR_RS14035at 926.182 kb on - strand, within BBR_RS14035at 926.190 kb on - strand, within BBR_RS14035at 926.223 kb on - strand, within BBR_RS14035at 926.312 kb on + strand, within BBR_RS14035at 926.315 kb on - strand, within BBR_RS14035at 926.344 kb on + strand, within BBR_RS14035at 926.359 kb on - strand, within BBR_RS14035at 926.366 kb on + strand, within BBR_RS14035at 926.385 kb on - strand, within BBR_RS14035at 926.385 kb on - strand, within BBR_RS14035at 926.412 kb on + strand, within BBR_RS14035at 926.419 kb on + strand, within BBR_RS14035at 926.420 kb on - strand, within BBR_RS14035at 926.420 kb on - strand, within BBR_RS14035at 926.424 kb on + strand, within BBR_RS14035at 926.427 kb on - strand, within BBR_RS14035at 926.455 kb on - strand, within BBR_RS14035at 926.508 kb on + strandat 926.532 kb on + strandat 926.541 kb on + strandat 926.619 kb on + strandat 926.639 kb on + strandat 926.642 kb on - strandat 926.664 kb on - strandat 926.731 kb on + strand, within BBR_RS14040at 926.814 kb on - strand, within BBR_RS14040at 926.814 kb on - strand, within BBR_RS14040at 926.852 kb on + strand, within BBR_RS14040at 926.977 kb on + strand, within BBR_RS14040at 926.987 kb on + strand, within BBR_RS14040at 926.987 kb on + strand, within BBR_RS14040at 926.992 kb on + strand, within BBR_RS14040at 926.995 kb on - strand, within BBR_RS14040at 927.019 kb on + strand, within BBR_RS14040at 927.031 kb on + strand, within BBR_RS14040at 927.058 kb on + strand, within BBR_RS14040at 927.058 kb on + strand, within BBR_RS14040at 927.192 kb on + strandat 927.197 kb on + strandat 927.223 kb on - strandat 927.229 kb on + strandat 927.237 kb on - strandat 927.237 kb on - strandat 927.412 kb on + strandat 927.437 kb on - strandat 927.438 kb on + strandat 927.487 kb on + strand, within BBR_RS14045

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day6
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924,888 + BBR_RS14030 0.46 +1.1
924,977 + BBR_RS14030 0.51 -1.2
925,012 - BBR_RS14030 0.53 -0.1
925,014 + BBR_RS14030 0.53 +1.0
925,015 - BBR_RS14030 0.53 +0.5
925,064 + BBR_RS14030 0.56 +3.6
925,091 - BBR_RS14030 0.57 -2.0
925,149 + BBR_RS14030 0.60 +0.3
925,185 + BBR_RS14030 0.62 -1.8
925,195 - BBR_RS14030 0.63 +1.4
925,195 - BBR_RS14030 0.63 +0.3
925,289 + BBR_RS14030 0.68 -3.1
925,289 + BBR_RS14030 0.68 -0.9
925,290 + BBR_RS14030 0.68 -0.4
925,290 - BBR_RS14030 0.68 -1.1
925,332 - BBR_RS14030 0.70 -0.2
925,398 - BBR_RS14030 0.74 +0.7
925,567 + BBR_RS14030 0.83 -3.0
925,567 + BBR_RS14030 0.83 -1.2
925,567 + BBR_RS14030 0.83 -1.3
925,604 - BBR_RS14030 0.85 -0.9
925,616 + BBR_RS14030 0.86 -0.4
925,624 - BBR_RS14030 0.86 +2.8
925,703 + +0.9
925,712 + -1.7
925,804 + -0.7
925,822 - -0.4
925,836 + -1.1
925,844 - -1.5
925,887 - -0.9
925,970 + BBR_RS14035 0.14 +0.7
926,007 + BBR_RS14035 0.20 +0.0
926,015 - BBR_RS14035 0.21 +2.0
926,033 + BBR_RS14035 0.24 -1.6
926,041 - BBR_RS14035 0.25 +0.9
926,043 - BBR_RS14035 0.26 -2.6
926,043 - BBR_RS14035 0.26 +0.9
926,057 + BBR_RS14035 0.28 -0.6
926,075 - BBR_RS14035 0.31 -0.2
926,106 + BBR_RS14035 0.35 +0.6
926,182 - BBR_RS14035 0.47 +1.9
926,190 - BBR_RS14035 0.48 +0.4
926,223 - BBR_RS14035 0.53 -0.5
926,312 + BBR_RS14035 0.67 -1.3
926,315 - BBR_RS14035 0.68 -0.2
926,344 + BBR_RS14035 0.72 -1.4
926,359 - BBR_RS14035 0.74 +0.9
926,366 + BBR_RS14035 0.75 +0.7
926,385 - BBR_RS14035 0.78 -0.0
926,385 - BBR_RS14035 0.78 -3.0
926,412 + BBR_RS14035 0.83 -0.6
926,419 + BBR_RS14035 0.84 -1.5
926,420 - BBR_RS14035 0.84 +1.1
926,420 - BBR_RS14035 0.84 +2.2
926,424 + BBR_RS14035 0.84 +3.5
926,427 - BBR_RS14035 0.85 -0.8
926,455 - BBR_RS14035 0.89 +0.7
926,508 + +3.1
926,532 + +0.6
926,541 + -0.3
926,619 + -1.5
926,639 + +0.2
926,642 - -1.3
926,664 - +0.9
926,731 + BBR_RS14040 0.17 -0.4
926,814 - BBR_RS14040 0.35 +1.9
926,814 - BBR_RS14040 0.35 +1.2
926,852 + BBR_RS14040 0.43 +1.7
926,977 + BBR_RS14040 0.69 +1.9
926,987 + BBR_RS14040 0.71 -1.5
926,987 + BBR_RS14040 0.71 +1.0
926,992 + BBR_RS14040 0.72 +0.2
926,995 - BBR_RS14040 0.73 +0.9
927,019 + BBR_RS14040 0.78 +0.2
927,031 + BBR_RS14040 0.80 -1.4
927,058 + BBR_RS14040 0.86 -0.3
927,058 + BBR_RS14040 0.86 +1.1
927,192 + +2.7
927,197 + +1.1
927,223 - +3.3
927,229 + -1.3
927,237 - +0.4
927,237 - +1.3
927,412 + +2.2
927,437 - +2.5
927,438 + -0.3
927,487 + BBR_RS14045 0.20 -0.9

Or see this region's nucleotide sequence