Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS23255

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS23250 and HSERO_RS23255 are separated by 217 nucleotidesHSERO_RS23255 and HSERO_RS23260 are separated by 32 nucleotides HSERO_RS23250: HSERO_RS23250 - branched-chain amino acid ABC transporter substrate-binding protein, at 5,336,052 to 5,337,242 _RS23250 HSERO_RS23255: HSERO_RS23255 - ABC transporter permease, at 5,337,460 to 5,338,326 _RS23255 HSERO_RS23260: HSERO_RS23260 - ABC transporter permease, at 5,338,359 to 5,339,363 _RS23260 Position (kb) 5337 5338 5339Strain fitness (log2 ratio) -1 0 1 2 3at 5336.552 kb on - strand, within HSERO_RS23250at 5336.554 kb on - strand, within HSERO_RS23250at 5336.562 kb on - strand, within HSERO_RS23250at 5336.629 kb on - strand, within HSERO_RS23250at 5336.807 kb on - strand, within HSERO_RS23250at 5336.939 kb on + strand, within HSERO_RS23250at 5337.218 kb on + strandat 5337.430 kb on - strandat 5337.558 kb on - strand, within HSERO_RS23255at 5337.758 kb on + strand, within HSERO_RS23255at 5337.758 kb on + strand, within HSERO_RS23255at 5337.842 kb on - strand, within HSERO_RS23255at 5337.927 kb on - strand, within HSERO_RS23255at 5338.073 kb on - strand, within HSERO_RS23255at 5338.161 kb on + strand, within HSERO_RS23255at 5338.330 kb on + strandat 5338.519 kb on + strand, within HSERO_RS23260at 5338.846 kb on - strand, within HSERO_RS23260at 5339.064 kb on - strand, within HSERO_RS23260at 5339.135 kb on + strand, within HSERO_RS23260at 5339.148 kb on - strand, within HSERO_RS23260

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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5,336,552 - HSERO_RS23250 0.42 +0.4
5,336,554 - HSERO_RS23250 0.42 -0.6
5,336,562 - HSERO_RS23250 0.43 +0.3
5,336,629 - HSERO_RS23250 0.48 +0.5
5,336,807 - HSERO_RS23250 0.63 -1.2
5,336,939 + HSERO_RS23250 0.74 -0.1
5,337,218 + -1.0
5,337,430 - -0.7
5,337,558 - HSERO_RS23255 0.11 +0.3
5,337,758 + HSERO_RS23255 0.34 +0.6
5,337,758 + HSERO_RS23255 0.34 +0.3
5,337,842 - HSERO_RS23255 0.44 +0.3
5,337,927 - HSERO_RS23255 0.54 +0.8
5,338,073 - HSERO_RS23255 0.71 +2.9
5,338,161 + HSERO_RS23255 0.81 +0.1
5,338,330 + -1.3
5,338,519 + HSERO_RS23260 0.16 -0.7
5,338,846 - HSERO_RS23260 0.48 -0.1
5,339,064 - HSERO_RS23260 0.70 +0.1
5,339,135 + HSERO_RS23260 0.77 +0.1
5,339,148 - HSERO_RS23260 0.79 +0.0

Or see this region's nucleotide sequence