Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23200 and HSERO_RS23205 are separated by 116 nucleotides HSERO_RS23205 and HSERO_RS23210 are separated by 101 nucleotides
HSERO_RS23200: HSERO_RS23200 - LysR family transcriptional regulator, at 5,323,174 to 5,324,100
_RS23200
HSERO_RS23205: HSERO_RS23205 - 3-beta hydroxysteroid dehydrogenase, at 5,324,217 to 5,324,828
_RS23205
HSERO_RS23210: HSERO_RS23210 - protein-disulfide isomerase, at 5,324,930 to 5,325,655
_RS23210
Position (kb) 5324
5325 Strain fitness (log2 ratio) -1
0
1 at 5323.268 kb on + strand, within HSERO_RS23200 at 5323.376 kb on - strand, within HSERO_RS23200 at 5323.380 kb on - strand, within HSERO_RS23200 at 5323.515 kb on + strand, within HSERO_RS23200 at 5323.515 kb on + strand, within HSERO_RS23200 at 5323.525 kb on - strand, within HSERO_RS23200 at 5323.572 kb on + strand, within HSERO_RS23200 at 5323.634 kb on + strand, within HSERO_RS23200 at 5323.652 kb on - strand, within HSERO_RS23200 at 5323.675 kb on + strand, within HSERO_RS23200 at 5323.816 kb on + strand, within HSERO_RS23200 at 5323.856 kb on - strand, within HSERO_RS23200 at 5324.140 kb on + strand at 5324.685 kb on + strand, within HSERO_RS23205 at 5324.693 kb on - strand, within HSERO_RS23205 at 5324.693 kb on - strand, within HSERO_RS23205 at 5324.789 kb on + strand at 5324.789 kb on + strand at 5324.789 kb on + strand at 5324.857 kb on - strand at 5324.857 kb on - strand at 5325.441 kb on - strand, within HSERO_RS23210 at 5325.518 kb on - strand, within HSERO_RS23210 at 5325.613 kb on - strand at 5325.615 kb on + strand at 5325.615 kb on + strand at 5325.707 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 5,323,268 + HSERO_RS23200 0.10 +0.0 5,323,376 - HSERO_RS23200 0.22 -1.0 5,323,380 - HSERO_RS23200 0.22 +0.2 5,323,515 + HSERO_RS23200 0.37 +0.4 5,323,515 + HSERO_RS23200 0.37 -1.2 5,323,525 - HSERO_RS23200 0.38 -0.0 5,323,572 + HSERO_RS23200 0.43 -0.2 5,323,634 + HSERO_RS23200 0.50 +0.0 5,323,652 - HSERO_RS23200 0.52 +0.2 5,323,675 + HSERO_RS23200 0.54 -0.4 5,323,816 + HSERO_RS23200 0.69 +0.5 5,323,856 - HSERO_RS23200 0.74 -0.2 5,324,140 + +0.3 5,324,685 + HSERO_RS23205 0.76 +0.0 5,324,693 - HSERO_RS23205 0.78 +1.0 5,324,693 - HSERO_RS23205 0.78 +0.5 5,324,789 + -0.6 5,324,789 + +0.4 5,324,789 + -0.2 5,324,857 - +0.3 5,324,857 - -0.4 5,325,441 - HSERO_RS23210 0.70 +0.0 5,325,518 - HSERO_RS23210 0.81 -1.0 5,325,613 - +0.3 5,325,615 + -0.4 5,325,615 + +0.2 5,325,707 - -0.8
Or see this region's nucleotide sequence