Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23140 and HSERO_RS23145 are separated by 256 nucleotides HSERO_RS23145 and HSERO_RS23150 are separated by 19 nucleotides HSERO_RS23150 and HSERO_RS23155 are separated by 117 nucleotides HSERO_RS23155 and HSERO_RS23160 are separated by 61 nucleotides
HSERO_RS23140: HSERO_RS23140 - hypothetical protein, at 5,311,186 to 5,311,908
_RS23140
HSERO_RS23145: HSERO_RS23145 - multidrug transporter, at 5,312,165 to 5,312,497
_RS23145
HSERO_RS23150: HSERO_RS23150 - AraC family transcriptional regulator, at 5,312,517 to 5,313,458
_RS23150
HSERO_RS23155: HSERO_RS23155 - AraC family transcriptional regulator, at 5,313,576 to 5,314,388
_RS23155
HSERO_RS23160: HSERO_RS23160 - short-chain dehydrogenase, at 5,314,450 to 5,315,208
_RS23160
Position (kb) 5312
5313
5314 Strain fitness (log2 ratio) -1
0
1 at 5311.522 kb on - strand, within HSERO_RS23140 at 5311.559 kb on + strand, within HSERO_RS23140 at 5311.618 kb on + strand, within HSERO_RS23140 at 5311.733 kb on - strand, within HSERO_RS23140 at 5311.785 kb on - strand, within HSERO_RS23140 at 5311.806 kb on + strand, within HSERO_RS23140 at 5311.826 kb on + strand, within HSERO_RS23140 at 5311.838 kb on + strand at 5311.853 kb on + strand at 5311.903 kb on + strand at 5311.916 kb on + strand at 5311.916 kb on + strand at 5311.923 kb on + strand at 5311.960 kb on - strand at 5312.114 kb on - strand at 5312.144 kb on - strand at 5312.201 kb on + strand, within HSERO_RS23145 at 5312.352 kb on + strand, within HSERO_RS23145 at 5312.360 kb on - strand, within HSERO_RS23145 at 5312.448 kb on + strand, within HSERO_RS23145 at 5312.492 kb on + strand at 5312.555 kb on + strand at 5312.555 kb on + strand at 5312.563 kb on - strand at 5312.708 kb on - strand, within HSERO_RS23150 at 5312.819 kb on - strand, within HSERO_RS23150 at 5313.062 kb on + strand, within HSERO_RS23150 at 5313.087 kb on + strand, within HSERO_RS23150 at 5313.203 kb on + strand, within HSERO_RS23150 at 5313.534 kb on + strand at 5313.584 kb on + strand at 5313.610 kb on - strand at 5314.027 kb on + strand, within HSERO_RS23155 at 5314.132 kb on - strand, within HSERO_RS23155 at 5314.387 kb on + strand at 5314.423 kb on - strand at 5314.431 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 5,311,522 - HSERO_RS23140 0.46 -0.1 5,311,559 + HSERO_RS23140 0.52 +0.4 5,311,618 + HSERO_RS23140 0.60 +0.1 5,311,733 - HSERO_RS23140 0.76 -0.1 5,311,785 - HSERO_RS23140 0.83 +0.7 5,311,806 + HSERO_RS23140 0.86 -0.2 5,311,826 + HSERO_RS23140 0.89 +0.1 5,311,838 + +1.0 5,311,853 + +0.3 5,311,903 + +0.9 5,311,916 + +0.7 5,311,916 + -1.3 5,311,923 + -0.1 5,311,960 - +0.2 5,312,114 - +0.3 5,312,144 - -0.1 5,312,201 + HSERO_RS23145 0.11 -0.0 5,312,352 + HSERO_RS23145 0.56 -0.0 5,312,360 - HSERO_RS23145 0.59 -0.3 5,312,448 + HSERO_RS23145 0.85 +1.4 5,312,492 + +0.8 5,312,555 + -0.1 5,312,555 + -0.6 5,312,563 - +1.1 5,312,708 - HSERO_RS23150 0.20 -0.6 5,312,819 - HSERO_RS23150 0.32 -0.8 5,313,062 + HSERO_RS23150 0.58 +0.0 5,313,087 + HSERO_RS23150 0.61 +0.8 5,313,203 + HSERO_RS23150 0.73 +1.5 5,313,534 + +0.2 5,313,584 + +0.2 5,313,610 - +0.7 5,314,027 + HSERO_RS23155 0.55 -0.3 5,314,132 - HSERO_RS23155 0.68 +0.1 5,314,387 + -0.1 5,314,423 - -0.4 5,314,431 - -0.3
Or see this region's nucleotide sequence