Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS21720 and HSERO_RS21725 are separated by 102 nucleotides HSERO_RS21725 and HSERO_RS21730 overlap by 4 nucleotides HSERO_RS21730 and HSERO_RS21735 are separated by 41 nucleotides
HSERO_RS21720: HSERO_RS21720 - transcriptional regulator, at 4,973,949 to 4,974,881
_RS21720
HSERO_RS21725: HSERO_RS21725 - polyketide cyclase, at 4,974,984 to 4,975,310
_RS21725
HSERO_RS21730: HSERO_RS21730 - short-chain dehydrogenase, at 4,975,307 to 4,976,089
_RS21730
HSERO_RS21735: HSERO_RS21735 - hypothetical protein, at 4,976,131 to 4,976,415
_RS21735
Position (kb) 4974
4975
4976 Strain fitness (log2 ratio) -1
0
1
2 at 4974.002 kb on - strand at 4974.227 kb on + strand, within HSERO_RS21720 at 4974.477 kb on - strand, within HSERO_RS21720 at 4974.575 kb on + strand, within HSERO_RS21720 at 4974.591 kb on - strand, within HSERO_RS21720 at 4974.606 kb on + strand, within HSERO_RS21720 at 4974.606 kb on + strand, within HSERO_RS21720 at 4974.686 kb on + strand, within HSERO_RS21720 at 4974.949 kb on + strand at 4975.085 kb on - strand, within HSERO_RS21725 at 4975.119 kb on + strand, within HSERO_RS21725 at 4975.147 kb on - strand, within HSERO_RS21725 at 4975.164 kb on + strand, within HSERO_RS21725 at 4975.319 kb on - strand at 4975.332 kb on - strand at 4975.358 kb on + strand at 4975.448 kb on + strand, within HSERO_RS21730 at 4975.602 kb on + strand, within HSERO_RS21730 at 4975.757 kb on + strand, within HSERO_RS21730 at 4975.819 kb on + strand, within HSERO_RS21730 at 4975.878 kb on - strand, within HSERO_RS21730 at 4975.906 kb on + strand, within HSERO_RS21730 at 4976.128 kb on + strand at 4976.136 kb on - strand at 4976.136 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 4,974,002 - -0.1 4,974,227 + HSERO_RS21720 0.30 -1.4 4,974,477 - HSERO_RS21720 0.57 +0.9 4,974,575 + HSERO_RS21720 0.67 +0.3 4,974,591 - HSERO_RS21720 0.69 -0.3 4,974,606 + HSERO_RS21720 0.70 +0.0 4,974,606 + HSERO_RS21720 0.70 +0.6 4,974,686 + HSERO_RS21720 0.79 -0.1 4,974,949 + -1.6 4,975,085 - HSERO_RS21725 0.31 +1.0 4,975,119 + HSERO_RS21725 0.41 +0.6 4,975,147 - HSERO_RS21725 0.50 +0.7 4,975,164 + HSERO_RS21725 0.55 +0.6 4,975,319 - -0.4 4,975,332 - -0.2 4,975,358 + +0.0 4,975,448 + HSERO_RS21730 0.18 +2.0 4,975,602 + HSERO_RS21730 0.38 +0.5 4,975,757 + HSERO_RS21730 0.57 +0.3 4,975,819 + HSERO_RS21730 0.65 -0.2 4,975,878 - HSERO_RS21730 0.73 +0.1 4,975,906 + HSERO_RS21730 0.77 -0.9 4,976,128 + -0.0 4,976,136 - +0.3 4,976,136 - +0.7
Or see this region's nucleotide sequence