Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS21380

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
4,891,823	+				+0.1
4,891,823	+				-0.5
4,891,996	-		HSERO_RS21375	0.26	+1.3
4,892,342	-		HSERO_RS21375	0.68	+2.1
4,892,497	+		HSERO_RS21375	0.86	+0.6
4,892,553	+				+2.1
4,892,588	+				-1.0
4,892,615	+				+0.9
4,892,914	-				+0.1
4,893,510	+		HSERO_RS21380	0.25	+0.2
4,893,716	+		HSERO_RS21380	0.30	+0.4
4,893,900	-		HSERO_RS21380	0.35	+1.9
4,893,987	+		HSERO_RS21380	0.38	+0.6
4,894,391	-		HSERO_RS21380	0.49	+0.5
4,894,717	-		HSERO_RS21380	0.58	+0.6
4,894,722	-		HSERO_RS21380	0.58	+1.0
4,895,075	+		HSERO_RS21380	0.68	+0.2
4,895,115	-		HSERO_RS21380	0.69	+0.3
4,895,423	-		HSERO_RS21380	0.78	+0.7
4,895,900	-				+0.2
4,895,938	-				+0.0
4,895,972	-				+1.6
4,896,063	+				+0.5
4,896,071	-				-1.2
4,896,307	-				+0.6
4,896,347	+				+0.4
4,896,523	+				-0.4
4,896,525	-				-0.3
4,896,525	-				-2.0
4,896,608	-				+0.0
4,896,608	-				-0.6
4,896,633	+				-0.6
4,896,641	-				+0.8
4,896,641	-				+0.7
4,896,687	-				+0.0
4,896,741	-				-0.9
4,896,843	-		HSERO_RS21385	0.12	+1.1
4,897,041	-		HSERO_RS21385	0.31	-0.1
4,897,221	-		HSERO_RS21385	0.49	-0.0