Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20770

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
4,756,550	-		HSERO_RS20760	0.44	-1.5
4,756,795	+		HSERO_RS20760	0.78	-0.0
4,756,930	-				+0.5
4,756,930	-				+0.2
4,757,148	+		HSERO_RS20765	0.40	+0.7
4,757,283	-				+0.8
4,757,343	+				+0.9
4,757,376	-				-0.6
4,757,409	+				-0.1
4,757,439	-		HSERO_RS20770	0.10	+0.3
4,757,454	-		HSERO_RS20770	0.12	+0.4
4,757,497	-		HSERO_RS20770	0.17	+1.1
4,757,587	+		HSERO_RS20770	0.27	-0.0
4,757,947	-		HSERO_RS20770	0.69	+0.5
4,758,131	+				-0.4
4,758,246	+				-0.2
4,758,489	-		HSERO_RS20775	0.52	+0.5
4,758,628	-				+0.6
4,758,628	-				-0.1
4,758,665	+				+0.6
4,758,667	+				+1.0
4,758,667	+				+0.1
4,758,667	+				+1.3
4,758,667	+				-0.2
4,758,667	+				+0.2
4,758,673	-				+0.0
4,758,675	-				+0.8
4,758,675	-				-0.2
4,758,685	+		HSERO_RS20780	0.10	-0.1
4,758,754	-		HSERO_RS20780	0.22	+0.1
4,758,872	+		HSERO_RS20780	0.43	+0.1
4,758,976	-		HSERO_RS20780	0.61	-0.3
4,759,115	-		HSERO_RS20780	0.85	-0.6