Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20250

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
4,645,828	+				-1.4
4,646,447	-				-3.2
4,646,447	-				-0.4
4,646,449	+				+0.1
4,646,479	+				-0.1
4,646,487	-				-0.1
4,646,487	-				-0.9
4,646,549	+				+0.7
4,646,554	+				-0.3
4,646,586	+				-0.1
4,646,600	-				+0.3
4,646,622	+				+0.2
4,646,622	+				-1.3
4,646,675	+				-0.4
4,646,681	-				+0.1
4,646,682	-				+1.2
4,646,683	-				-0.2
4,646,887	+		HSERO_RS20250	0.34	+1.7
4,647,167	+				-0.0
4,647,174	+				-0.2
4,647,174	+				-0.2
4,647,182	-				-2.0
4,647,182	-				-0.3
4,647,657	-		HSERO_RS20255	0.61	-0.3
4,647,710	-		HSERO_RS20255	0.68	-0.5
4,647,788	+		HSERO_RS20255	0.79	+0.3
4,647,833	-		HSERO_RS20255	0.84	-0.1
4,647,855	-		HSERO_RS20255	0.87	-0.1
4,647,917	+				+0.2