Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS19665

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
4,508,149	+		HSERO_RS19655	0.72	+0.8
4,508,268	-				+0.3
4,508,284	-				+0.0
4,508,342	-				-0.9
4,508,368	-				-0.8
4,508,377	+				+0.4
4,508,390	-				-0.2
4,508,434	+		HSERO_RS19660	0.11	+0.4
4,508,438	-		HSERO_RS19660	0.12	-0.2
4,508,594	-		HSERO_RS19660	0.37	+0.0
4,508,739	+		HSERO_RS19660	0.61	+0.6
4,508,884	-		HSERO_RS19660	0.84	+0.2
4,508,896	-		HSERO_RS19660	0.86	+0.4
4,508,946	+				+0.1
4,508,976	-				+0.3
4,509,135	-				-0.0
4,509,179	+		HSERO_RS19665	0.11	-0.2
4,509,306	-		HSERO_RS19665	0.24	-0.2
4,509,360	+		HSERO_RS19665	0.29	+1.5
4,509,448	-		HSERO_RS19665	0.38	+1.2
4,509,448	-		HSERO_RS19665	0.38	-0.0
4,509,481	-		HSERO_RS19665	0.41	+1.8
4,509,802	+		HSERO_RS19665	0.73	+0.9
4,510,291	-				+0.0
4,510,404	+		HSERO_RS19670	0.13	-0.2
4,510,534	-		HSERO_RS19670	0.19	+0.3
4,510,686	+		HSERO_RS19670	0.25	+0.2
4,510,940	+		HSERO_RS19670	0.36	-0.4
4,510,941	+				-0.8
4,510,973	+		HSERO_RS19670	0.37	-0.5
4,510,981	-		HSERO_RS19670	0.38	+1.9
4,510,981	-		HSERO_RS19670	0.38	-0.0
4,511,043	+		HSERO_RS19670	0.40	+0.7
4,511,051	-		HSERO_RS19670	0.40	+0.0
4,511,051	-		HSERO_RS19670	0.40	+0.8