Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19145 and HSERO_RS19150 are separated by 50 nucleotides HSERO_RS19150 and HSERO_RS19155 are separated by 16 nucleotides HSERO_RS19155 and HSERO_RS19160 are separated by 274 nucleotides
HSERO_RS19145: HSERO_RS19145 - drug/metabolite transporter (DMT) superfamily permease, at 4,392,992 to 4,393,909
_RS19145
HSERO_RS19150: HSERO_RS19150 - 3-mercaptopyruvate sulfurtransferase, at 4,393,960 to 4,394,817
_RS19150
HSERO_RS19155: HSERO_RS19155 - LysR family transcriptional regulator, at 4,394,834 to 4,395,757
_RS19155
HSERO_RS19160: HSERO_RS19160 - divalent cation transporter, at 4,396,032 to 4,396,742
_RS19160
Position (kb) 4394
4395
4396 Strain fitness (log2 ratio) -1
0
1 at 4393.844 kb on - strand at 4393.876 kb on + strand at 4393.883 kb on + strand at 4393.904 kb on + strand at 4393.911 kb on - strand at 4393.912 kb on - strand at 4393.926 kb on - strand at 4394.474 kb on - strand, within HSERO_RS19150 at 4394.474 kb on - strand, within HSERO_RS19150 at 4394.476 kb on - strand, within HSERO_RS19150 at 4394.610 kb on + strand, within HSERO_RS19150 at 4394.917 kb on + strand at 4395.241 kb on - strand, within HSERO_RS19155 at 4395.509 kb on + strand, within HSERO_RS19155 at 4395.561 kb on + strand, within HSERO_RS19155 at 4395.641 kb on - strand, within HSERO_RS19155 at 4395.793 kb on - strand at 4395.850 kb on + strand at 4395.882 kb on - strand at 4395.979 kb on - strand at 4396.184 kb on - strand, within HSERO_RS19160 at 4396.391 kb on + strand, within HSERO_RS19160 at 4396.629 kb on - strand, within HSERO_RS19160 at 4396.642 kb on + strand, within HSERO_RS19160 at 4396.649 kb on - strand, within HSERO_RS19160
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 4,393,844 - +0.5 4,393,876 + -0.2 4,393,883 + -0.4 4,393,904 + +1.2 4,393,911 - -0.6 4,393,912 - -0.5 4,393,926 - +0.8 4,394,474 - HSERO_RS19150 0.60 +0.1 4,394,474 - HSERO_RS19150 0.60 -1.3 4,394,476 - HSERO_RS19150 0.60 -0.0 4,394,610 + HSERO_RS19150 0.76 +0.5 4,394,917 + -0.1 4,395,241 - HSERO_RS19155 0.44 +0.4 4,395,509 + HSERO_RS19155 0.73 +1.1 4,395,561 + HSERO_RS19155 0.79 +1.0 4,395,641 - HSERO_RS19155 0.87 +0.0 4,395,793 - +0.2 4,395,850 + +0.2 4,395,882 - +0.6 4,395,979 - -0.7 4,396,184 - HSERO_RS19160 0.21 +0.7 4,396,391 + HSERO_RS19160 0.50 -0.6 4,396,629 - HSERO_RS19160 0.84 -0.0 4,396,642 + HSERO_RS19160 0.86 +0.1 4,396,649 - HSERO_RS19160 0.87 +0.5
Or see this region's nucleotide sequence