Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS17560 and HSERO_RS17565 are separated by 11 nucleotides HSERO_RS17565 and HSERO_RS17570 are separated by 21 nucleotides HSERO_RS17570 and HSERO_RS17575 are separated by 38 nucleotides HSERO_RS17575 and HSERO_RS17580 are separated by 37 nucleotides
HSERO_RS17560: HSERO_RS17560 - glutamate/aspartate transporter permease GltK, at 4,025,621 to 4,026,304
_RS17560
HSERO_RS17565: HSERO_RS17565 - glutamate/aspartate ABC transporter permease GltJ, at 4,026,316 to 4,027,041
_RS17565
HSERO_RS17570: HSERO_RS17570 - 4-carboxymuconolactone decarboxylase, at 4,027,063 to 4,027,638
_RS17570
HSERO_RS17575: HSERO_RS17575 - ABC transporter, at 4,027,677 to 4,028,594
_RS17575
HSERO_RS17580: HSERO_RS17580 - hypothetical protein, at 4,028,632 to 4,029,954
_RS17580
Position (kb) 4027
4028 Strain fitness (log2 ratio) -1
0
1 at 4026.162 kb on - strand, within HSERO_RS17560 at 4026.186 kb on + strand, within HSERO_RS17560 at 4026.186 kb on + strand, within HSERO_RS17560 at 4026.189 kb on - strand, within HSERO_RS17560 at 4026.225 kb on - strand, within HSERO_RS17560 at 4026.401 kb on - strand, within HSERO_RS17565 at 4026.425 kb on + strand, within HSERO_RS17565 at 4026.453 kb on + strand, within HSERO_RS17565 at 4026.802 kb on + strand, within HSERO_RS17565 at 4026.936 kb on + strand, within HSERO_RS17565 at 4026.988 kb on - strand at 4027.244 kb on + strand, within HSERO_RS17570 at 4027.837 kb on - strand, within HSERO_RS17575 at 4027.874 kb on + strand, within HSERO_RS17575 at 4027.889 kb on + strand, within HSERO_RS17575 at 4027.889 kb on + strand, within HSERO_RS17575 at 4027.931 kb on - strand, within HSERO_RS17575 at 4027.952 kb on - strand, within HSERO_RS17575 at 4028.008 kb on - strand, within HSERO_RS17575 at 4028.010 kb on + strand, within HSERO_RS17575 at 4028.038 kb on - strand, within HSERO_RS17575 at 4028.069 kb on + strand, within HSERO_RS17575 at 4028.077 kb on - strand, within HSERO_RS17575 at 4028.090 kb on + strand, within HSERO_RS17575 at 4028.112 kb on + strand, within HSERO_RS17575 at 4028.135 kb on + strand, within HSERO_RS17575 at 4028.135 kb on + strand, within HSERO_RS17575 at 4028.143 kb on - strand, within HSERO_RS17575 at 4028.155 kb on - strand, within HSERO_RS17575 at 4028.324 kb on + strand, within HSERO_RS17575 at 4028.324 kb on + strand, within HSERO_RS17575 at 4028.445 kb on - strand, within HSERO_RS17575
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 4,026,162 - HSERO_RS17560 0.79 -0.2 4,026,186 + HSERO_RS17560 0.83 +0.1 4,026,186 + HSERO_RS17560 0.83 +0.1 4,026,189 - HSERO_RS17560 0.83 +0.1 4,026,225 - HSERO_RS17560 0.88 -0.2 4,026,401 - HSERO_RS17565 0.12 -0.5 4,026,425 + HSERO_RS17565 0.15 -0.3 4,026,453 + HSERO_RS17565 0.19 +0.2 4,026,802 + HSERO_RS17565 0.67 -0.7 4,026,936 + HSERO_RS17565 0.85 +0.4 4,026,988 - -0.3 4,027,244 + HSERO_RS17570 0.31 +0.7 4,027,837 - HSERO_RS17575 0.17 +0.2 4,027,874 + HSERO_RS17575 0.21 +0.3 4,027,889 + HSERO_RS17575 0.23 +0.3 4,027,889 + HSERO_RS17575 0.23 +0.7 4,027,931 - HSERO_RS17575 0.28 -0.1 4,027,952 - HSERO_RS17575 0.30 -1.2 4,028,008 - HSERO_RS17575 0.36 -0.5 4,028,010 + HSERO_RS17575 0.36 +0.3 4,028,038 - HSERO_RS17575 0.39 -0.3 4,028,069 + HSERO_RS17575 0.43 -0.4 4,028,077 - HSERO_RS17575 0.44 -0.6 4,028,090 + HSERO_RS17575 0.45 +1.5 4,028,112 + HSERO_RS17575 0.47 -0.2 4,028,135 + HSERO_RS17575 0.50 -0.3 4,028,135 + HSERO_RS17575 0.50 -0.2 4,028,143 - HSERO_RS17575 0.51 +0.9 4,028,155 - HSERO_RS17575 0.52 -0.5 4,028,324 + HSERO_RS17575 0.70 +0.3 4,028,324 + HSERO_RS17575 0.70 -0.4 4,028,445 - HSERO_RS17575 0.84 -0.5
Or see this region's nucleotide sequence