Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS17180

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
3,932,704	-		HSERO_RS17170	0.87	+0.5
3,932,724	+		HSERO_RS17170	0.88	-0.4
3,932,804	-				+0.7
3,932,865	-				-0.4
3,932,976	-				+0.3
3,933,028	-		HSERO_RS17175	0.11	-0.8
3,933,057	+		HSERO_RS17175	0.16	-1.0
3,933,161	-		HSERO_RS17175	0.32	-0.0
3,933,166	-		HSERO_RS17175	0.33	-0.1
3,933,376	-		HSERO_RS17175	0.66	+0.0
3,933,631	+				+1.3
3,933,647	+				+0.6
3,933,729	+		HSERO_RS17180	0.16	+0.6
3,933,782	-		HSERO_RS17180	0.25	+2.9
3,933,782	-		HSERO_RS17180	0.25	+0.0
3,933,830	-		HSERO_RS17180	0.32	-0.5
3,934,117	+		HSERO_RS17180	0.78	+1.3
3,934,237	+				-0.1
3,934,291	-				-0.6
3,934,309	-				+0.3
3,934,584	-				-0.0
3,934,596	-				-0.3
3,934,754	+				-0.3
3,934,810	+				-1.0
3,934,920	-				-0.0
3,935,084	+				+0.3
3,935,090	-				-0.6
3,935,090	-				-0.8
3,935,110	+				+0.1