Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16100

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
3,674,230	-		HSERO_RS16095	0.21	+0.5
3,674,395	+		HSERO_RS16095	0.35	-0.9
3,674,506	+		HSERO_RS16095	0.45	-0.2
3,674,511	+		HSERO_RS16095	0.45	-0.2
3,674,630	-		HSERO_RS16095	0.55	+0.0
3,674,640	-		HSERO_RS16095	0.56	+0.3
3,675,003	+		HSERO_RS16095	0.88	+0.1
3,675,082	+				+0.2
3,675,147	-				-0.1
3,675,214	+				+0.6
3,675,222	-				+0.3
3,675,282	+				+0.6
3,675,556	+		HSERO_RS16100	0.28	+0.4
3,675,559	-		HSERO_RS16100	0.28	+0.8
3,675,559	-		HSERO_RS16100	0.28	+1.1
3,675,559	-		HSERO_RS16100	0.28	+0.6
3,675,565	-		HSERO_RS16100	0.29	+0.2
3,675,568	+		HSERO_RS16100	0.29	-0.7
3,675,620	+		HSERO_RS16100	0.33	+0.6
3,675,826	+		HSERO_RS16100	0.51	+0.9
3,675,851	+		HSERO_RS16100	0.53	+0.3
3,675,980	-		HSERO_RS16100	0.63	-0.2
3,676,095	-		HSERO_RS16100	0.73	+0.3
3,676,184	+		HSERO_RS16100	0.80	+1.0
3,676,309	-				+0.6
3,676,317	+				+0.8
3,676,410	-				+0.2
3,676,453	+				+0.9
3,676,453	+				+0.6
3,676,461	-				+0.8
3,676,461	-				-0.4
3,676,461	-				+0.5
3,676,627	-				-0.9
3,676,634	+				+0.3
3,676,791	-				-0.7
3,676,985	+		HSERO_RS16105	0.42	-0.0
3,677,137	+				+0.8
3,677,147	+		HSERO_RS16105	0.80	+0.5
3,677,345	-				-0.7