Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15600

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
3,563,584	+				+0.9
3,563,584	+				+0.8
3,563,798	+		HSERO_RS15600	0.20	+0.2
3,564,031	+		HSERO_RS15600	0.36	+2.7
3,564,139	+		HSERO_RS15600	0.43	+0.5
3,564,259	+		HSERO_RS15600	0.51	+0.7
3,564,259	+		HSERO_RS15600	0.51	+0.7
3,564,267	-		HSERO_RS15600	0.51	-0.4
3,564,300	+		HSERO_RS15600	0.53	+0.5
3,564,330	-		HSERO_RS15600	0.55	+0.3
3,564,448	-		HSERO_RS15600	0.63	+0.5
3,564,524	-		HSERO_RS15600	0.68	+1.3
3,564,549	+		HSERO_RS15600	0.70	+1.1
3,564,708	-		HSERO_RS15600	0.80	+1.2
3,564,885	-				+0.8
3,565,355	-		HSERO_RS15605	0.21	-1.2
3,565,384	+		HSERO_RS15605	0.24	+0.0
3,565,425	+		HSERO_RS15605	0.29	+0.3
3,565,425	+		HSERO_RS15605	0.29	+0.2
3,565,433	-		HSERO_RS15605	0.30	-0.3
3,565,478	+		HSERO_RS15605	0.35	-0.6
3,565,486	-		HSERO_RS15605	0.36	-0.4
3,565,486	-		HSERO_RS15605	0.36	-0.2
3,565,486	-		HSERO_RS15605	0.36	-0.3
3,565,691	-		HSERO_RS15605	0.59	+0.6
3,565,737	+		HSERO_RS15605	0.65	+0.1
3,565,770	-		HSERO_RS15605	0.68	+0.6
3,565,775	-		HSERO_RS15605	0.69	+0.5
3,565,791	-		HSERO_RS15605	0.71	-0.5
3,565,904	+		HSERO_RS15605	0.84	-0.2
3,565,906	+		HSERO_RS15605	0.84	-0.3