Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15535

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
3,549,052	+				-0.1
3,549,060	-				+1.2
3,549,082	+				-0.0
3,549,090	-				+1.9
3,549,095	-				+1.8
3,549,100	-				+2.3
3,549,152	-				+2.3
3,549,154	-				+0.6
3,549,242	+				-0.1
3,549,247	+				+0.6
3,549,425	+		HSERO_RS15530	0.18	+1.0
3,549,502	+		HSERO_RS15530	0.28	+1.5
3,549,602	+		HSERO_RS15530	0.42	+0.8
3,549,602	+				+0.0
3,549,609	+		HSERO_RS15530	0.43	+0.5
3,549,683	+		HSERO_RS15530	0.52	+1.8
3,549,992	-				+0.0
3,550,456	-		HSERO_RS15535	0.22	+1.0
3,550,774	+		HSERO_RS15535	0.39	+1.6
3,550,935	-		HSERO_RS15535	0.47	+0.9
3,550,935	-		HSERO_RS15535	0.47	+1.0
3,550,984	+		HSERO_RS15535	0.50	+0.6
3,550,992	-		HSERO_RS15535	0.50	+0.7
3,551,067	-		HSERO_RS15535	0.54	+0.5
3,551,112	-		HSERO_RS15535	0.56	+1.0
3,551,257	+		HSERO_RS15535	0.64	+1.2
3,551,288	+		HSERO_RS15535	0.65	+1.6
3,551,601	-		HSERO_RS15535	0.82	+0.9
3,551,764	+				+1.3
3,551,952	-				+0.0
3,551,952	-				-0.2
3,552,030	-				-1.1
3,552,129	-				-1.2
3,552,263	+		HSERO_RS15540	0.24	-0.3
3,552,425	-		HSERO_RS15540	0.41	-1.3
3,552,647	+		HSERO_RS15540	0.65	-0.7
3,552,904	-				-2.7