Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15530

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
3,548,384	-		HSERO_RS15525	0.86	+0.2
3,548,390	-		HSERO_RS15525	0.87	+1.0
3,548,403	+		HSERO_RS15525	0.89	-0.3
3,548,433	+				-0.8
3,548,504	+				+0.6
3,548,504	+				-0.3
3,548,512	-				-0.2
3,548,512	-				-0.6
3,548,512	-				+0.2
3,548,525	-				+2.0
3,548,606	+				+0.1
3,548,614	-				+1.9
3,548,690	+				+0.3
3,548,698	-				-0.3
3,548,703	-				+2.1
3,548,711	+				-1.1
3,548,856	-				+1.2
3,548,863	+				+0.4
3,548,868	+				-0.1
3,548,881	-				-2.0
3,548,881	-				-0.8
3,549,052	+				-0.1
3,549,060	-				+1.2
3,549,082	+				-0.0
3,549,090	-				+1.9
3,549,095	-				+1.8
3,549,100	-				+2.3
3,549,152	-				+2.3
3,549,154	-				+0.6
3,549,242	+				-0.1
3,549,247	+				+0.6
3,549,425	+		HSERO_RS15530	0.18	+1.0
3,549,502	+		HSERO_RS15530	0.28	+1.5
3,549,602	+		HSERO_RS15530	0.42	+0.8
3,549,602	+				+0.0
3,549,609	+		HSERO_RS15530	0.43	+0.5
3,549,683	+		HSERO_RS15530	0.52	+1.8
3,549,992	-				+0.0
3,550,456	-		HSERO_RS15535	0.22	+1.0
3,550,774	+		HSERO_RS15535	0.39	+1.6
3,550,935	-		HSERO_RS15535	0.47	+0.9
3,550,935	-		HSERO_RS15535	0.47	+1.0
3,550,984	+		HSERO_RS15535	0.50	+0.6
3,550,992	-		HSERO_RS15535	0.50	+0.7