Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS14955

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
3,396,592	-				+0.4
3,396,841	-		HSERO_RS14950	0.17	-0.9
3,396,939	+		HSERO_RS14950	0.37	-0.0
3,397,757	-		HSERO_RS14955	0.22	+1.0
3,397,851	+		HSERO_RS14955	0.27	+0.7
3,397,910	+		HSERO_RS14955	0.29	+4.2
3,397,945	-		HSERO_RS14955	0.31	+0.8
3,398,362	-		HSERO_RS14955	0.50	+1.3
3,398,634	-		HSERO_RS14955	0.63	+1.1
3,398,680	+		HSERO_RS14955	0.65	+1.7
3,399,153	-		HSERO_RS14955	0.87	+0.8
3,399,301	+				+0.8
3,399,492	+				+0.1
3,399,492	+				+0.6
3,399,574	+		HSERO_RS14960	0.23	+0.4
3,399,660	+		HSERO_RS14960	0.47	+0.3
3,399,761	-		HSERO_RS14960	0.74	+0.1
3,399,907	+				+0.3
3,399,949	-				-0.3
3,400,015	+				+1.7
3,400,015	+				+0.8
3,400,015	+				+0.6
3,400,027	+				+1.3
3,400,028	-		HSERO_RS14965	0.11	+0.1
3,400,156	+		HSERO_RS14965	0.34	+1.4
3,400,156	+		HSERO_RS14965	0.34	+1.5