Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS13845

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
3,148,112	+				-0.8
3,148,120	-				-1.4
3,148,145	-				+0.2
3,148,196	-				+0.3
3,148,347	+		HSERO_RS13840	0.27	-0.0
3,148,531	-		HSERO_RS13840	0.48	+0.2
3,148,541	-		HSERO_RS13840	0.50	-0.1
3,148,562	+		HSERO_RS13840	0.52	-0.6
3,148,595	+		HSERO_RS13840	0.56	-0.7
3,148,603	-				-0.7
3,148,605	+		HSERO_RS13840	0.57	+0.4
3,148,605	+		HSERO_RS13840	0.57	+0.3
3,148,613	-		HSERO_RS13840	0.58	+0.6
3,148,698	+		HSERO_RS13840	0.68	-0.5
3,148,920	-				+0.3
3,148,950	+				+0.1
3,149,005	+				-0.1
3,149,138	-				-1.3
3,149,438	-		HSERO_RS13845	0.54	+0.5
3,149,594	-		HSERO_RS13845	0.76	+0.9
3,149,672	+		HSERO_RS13845	0.88	+0.8
3,149,677	+		HSERO_RS13845	0.89	-0.8
3,149,771	+				+0.2
3,149,896	+				-0.1
3,150,200	-		HSERO_RS13850	0.29	+0.7
3,150,226	+		HSERO_RS13850	0.33	+0.8
3,150,380	+		HSERO_RS13850	0.55	-0.7
3,150,396	+		HSERO_RS13850	0.57	-1.4
3,150,548	-		HSERO_RS13850	0.79	-0.3
3,150,575	+				+0.9
3,150,610	+		HSERO_RS13850	0.88	-0.2
3,150,733	+				+0.2
3,150,741	-				-0.8
3,150,741	-				-0.3
3,150,741	-				-0.9