Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12965

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,955,488	+		HSERO_RS12955	0.62	+0.2
2,955,613	-		HSERO_RS12955	0.78	-1.1
2,955,640	-		HSERO_RS12955	0.82	-2.1
2,955,717	+				+0.5
2,955,746	-				-0.7
2,955,746	-				-0.3
2,955,792	-				-0.8
2,955,942	-				-0.9
2,956,172	+		HSERO_RS12960	0.78	-0.7
2,956,180	-		HSERO_RS12960	0.80	+0.3
2,956,400	+		HSERO_RS12965	0.16	-0.2
2,956,402	+		HSERO_RS12965	0.16	+1.1
2,956,556	-		HSERO_RS12965	0.35	+0.7
2,956,595	+		HSERO_RS12965	0.40	-0.4
2,957,074	+				-0.1
2,957,171	-				-0.2
2,957,250	-		HSERO_RS12970	0.16	+1.1
2,957,289	+		HSERO_RS12970	0.21	+0.6
2,957,330	+		HSERO_RS12970	0.26	+2.7
2,957,338	-		HSERO_RS12970	0.27	-0.1
2,957,539	+		HSERO_RS12970	0.50	-0.3
2,957,680	+		HSERO_RS12970	0.67	-0.3
2,957,756	-		HSERO_RS12970	0.76	-0.2
2,958,078	+				-0.2