Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12780

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,911,133	+				+1.6
2,911,522	+		HSERO_RS12775	0.23	+1.0
2,911,544	+		HSERO_RS12775	0.25	+0.6
2,911,612	+		HSERO_RS12775	0.34	-0.3
2,912,188	+				+0.4
2,912,191	-				-0.0
2,912,268	-				+1.0
2,912,447	+		HSERO_RS12780	0.10	+2.1
2,912,577	+		HSERO_RS12780	0.14	-0.1
2,912,856	+		HSERO_RS12780	0.23	+0.9
2,912,972	+		HSERO_RS12780	0.27	+2.3
2,913,050	-		HSERO_RS12780	0.30	+0.5
2,913,061	-		HSERO_RS12780	0.30	+0.7
2,913,089	-		HSERO_RS12780	0.31	+0.2
2,913,187	-		HSERO_RS12780	0.34	-0.2
2,913,266	+		HSERO_RS12780	0.37	+1.2
2,913,274	-		HSERO_RS12780	0.37	+0.7
2,913,482	-		HSERO_RS12780	0.43	+0.5
2,913,540	+		HSERO_RS12780	0.45	+0.5
2,913,943	-		HSERO_RS12780	0.58	+0.4
2,914,084	+		HSERO_RS12780	0.63	+0.3
2,914,228	-		HSERO_RS12780	0.67	+1.2
2,914,294	-		HSERO_RS12780	0.70	+0.4
2,914,381	+		HSERO_RS12780	0.72	+2.1
2,914,389	-		HSERO_RS12780	0.73	+1.2
2,914,422	-		HSERO_RS12780	0.74	+1.6
2,914,461	+		HSERO_RS12780	0.75	+0.8
2,914,786	+		HSERO_RS12780	0.85	+0.5
2,914,789	-		HSERO_RS12780	0.86	+0.4
2,914,799	-		HSERO_RS12780	0.86	+0.4
2,914,847	-		HSERO_RS12780	0.87	+1.6
2,914,897	+		HSERO_RS12780	0.89	+0.8
2,914,897	+				+0.3
2,914,936	+				+0.7
2,914,951	+				+0.9
2,915,050	-				+0.4
2,915,052	+				+1.2
2,915,071	-				+0.3
2,915,096	+				+1.3
2,915,252	+				-0.2
2,915,253	+				-0.5
2,915,325	-		HSERO_RS12785	0.11	-0.6
2,915,568	-		HSERO_RS12785	0.45	+0.1
2,915,974	-				-0.2
2,916,016	+				+0.5
2,916,061	-				-0.2
2,916,190	-				+0.9
2,916,204	-				-0.6
2,916,217	-				-0.6