Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12730

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,898,943	-				+0.1
2,898,977	-				+0.8
2,898,977	-				+1.0
2,899,082	+		HSERO_RS12725	0.18	-1.2
2,899,090	-		HSERO_RS12725	0.19	+0.2
2,899,090	-		HSERO_RS12725	0.19	+1.1
2,899,150	+		HSERO_RS12725	0.25	-0.6
2,899,415	-		HSERO_RS12725	0.54	+0.5
2,899,602	+		HSERO_RS12725	0.75	+1.6
2,899,602	+		HSERO_RS12725	0.75	-0.0
2,899,715	+		HSERO_RS12725	0.87	+0.1
2,899,750	+				-0.7
2,899,867	-				+1.1
2,899,898	-				+1.1
2,899,940	-				+1.5
2,900,139	+		HSERO_RS12730	0.23	+1.4
2,900,145	+		HSERO_RS12730	0.24	+1.2
2,900,145	+		HSERO_RS12730	0.24	+1.0
2,900,256	+		HSERO_RS12730	0.35	+0.1
2,900,318	-		HSERO_RS12730	0.42	+1.2
2,900,323	-		HSERO_RS12730	0.42	+0.5
2,900,356	-		HSERO_RS12730	0.46	+1.2
2,900,358	+		HSERO_RS12730	0.46	+0.5
2,900,366	-		HSERO_RS12730	0.47	+1.1
2,900,371	+		HSERO_RS12730	0.47	+0.8
2,900,513	+		HSERO_RS12730	0.62	+1.0
2,900,518	+		HSERO_RS12730	0.62	+1.1
2,900,912	+				-0.7
2,901,019	-		HSERO_RS12735	0.25	+0.4
2,901,053	+		HSERO_RS12735	0.32	+1.5
2,901,405	-				-0.4
2,901,628	-		HSERO_RS12740	0.48	-1.3
2,901,729	-		HSERO_RS12740	0.73	-1.2
2,901,850	+				+0.9