Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS11980

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,726,763	+				+0.9
2,727,037	-		HSERO_RS11975	0.38	-0.2
2,727,054	+		HSERO_RS11975	0.43	-0.3
2,727,059	+		HSERO_RS11975	0.44	-1.2
2,727,062	-		HSERO_RS11975	0.45	+0.4
2,727,095	-		HSERO_RS11975	0.54	-0.3
2,727,360	+				+0.2
2,727,559	-		HSERO_RS11980	0.47	+0.4
2,727,696	+		HSERO_RS11980	0.86	+0.8
2,727,842	-				-0.6
2,728,200	+		HSERO_RS11985	0.79	-0.0
2,728,222	-		HSERO_RS11985	0.83	+0.1
2,728,304	+				+0.0
2,728,482	-				+0.2
2,728,520	-				+0.3
2,728,571	+				-1.6
2,728,633	-		HSERO_RS11990	0.17	+0.0
2,728,737	-		HSERO_RS11990	0.33	-2.0
2,728,743	-		HSERO_RS11990	0.34	+0.3