Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS11890

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,707,416	+		HSERO_RS11880	0.81	-0.1
2,707,424	-		HSERO_RS11880	0.86	-0.6
2,707,500	+				-1.1
2,707,552	+				-0.1
2,707,849	-		HSERO_RS11885	0.48	+0.2
2,708,140	+				-0.3
2,708,208	+				+0.1
2,708,221	-				+0.6
2,708,239	+				-0.2
2,708,244	+				+1.2
2,708,257	-				+0.0
2,708,481	+		HSERO_RS11890	0.39	+0.3
2,708,481	+		HSERO_RS11890	0.39	+0.8
2,708,611	+		HSERO_RS11890	0.57	+0.8
2,708,753	+		HSERO_RS11890	0.78	+0.2
2,708,950	+				-0.5
2,708,983	+				-0.4
2,709,035	-				+0.5
2,709,052	+				+0.1
2,709,052	+				-0.8
2,709,064	+				-0.0
2,709,109	+				+0.3
2,709,164	+				+0.3
2,709,166	+				-0.0
2,709,166	+				+1.2
2,709,166	+				+0.3
2,709,174	-				-0.8
2,709,240	-				-0.3
2,709,258	+				+0.0
2,709,314	+		HSERO_RS11895	0.12	-0.4
2,709,321	+		HSERO_RS11895	0.13	+0.2
2,709,396	+		HSERO_RS11895	0.20	-0.1
2,709,401	+		HSERO_RS11895	0.20	+0.3
2,709,401	+		HSERO_RS11895	0.20	-0.2
2,709,404	-		HSERO_RS11895	0.21	+0.1
2,709,411	+		HSERO_RS11895	0.21	-2.5
2,709,475	+		HSERO_RS11895	0.27	+0.1
2,709,506	-		HSERO_RS11895	0.30	-0.5
2,709,547	+		HSERO_RS11895	0.34	+0.0
2,709,807	-		HSERO_RS11895	0.58	+0.3