Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS11835

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,698,616	+				-0.4
2,698,638	+				-0.7
2,698,675	-				+1.1
2,698,769	+		HSERO_RS11825	0.33	+0.3
2,698,792	-		HSERO_RS11825	0.42	-0.8
2,698,824	-		HSERO_RS11825	0.54	+0.2
2,698,827	+		HSERO_RS11825	0.55	-1.0
2,698,837	+		HSERO_RS11825	0.58	+1.3
2,698,899	+		HSERO_RS11825	0.82	+1.6
2,698,917	+		HSERO_RS11825	0.88	-1.5
2,698,925	-				-0.4
2,698,925	-				-0.6
2,698,925	-				-0.5
2,698,941	+				-0.0
2,699,071	-				+0.3
2,699,094	-				-0.7
2,699,138	+				-2.6
2,699,138	+				+0.3
2,699,163	-				-1.5
2,699,239	-		HSERO_RS11830	0.11	-0.1
2,699,315	+		HSERO_RS11830	0.30	-0.7
2,699,613	+				-0.1
2,699,614	+				-0.5
2,699,665	-		HSERO_RS11835	0.18	+0.5
2,699,862	-		HSERO_RS11835	0.61	+0.5
2,699,999	+				+0.3
2,700,086	+				-0.3
2,700,363	-		HSERO_RS11840	0.42	-0.3
2,700,420	+		HSERO_RS11840	0.49	-0.0
2,700,448	+		HSERO_RS11840	0.53	-0.5
2,700,527	-		HSERO_RS11840	0.63	-0.1
2,700,542	-		HSERO_RS11840	0.65	-0.1
2,700,737	+				-0.5
2,700,743	+				-1.1
2,700,743	+				-0.0
2,700,748	+				-1.5
2,700,751	-				-1.2
2,700,763	+				-0.2
2,700,811	+				+1.3
2,700,819	-				-0.7
2,700,851	-				-0.5