Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS11115

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,505,304	+				+1.2
2,505,342	+		HSERO_RS11110	0.33	-1.5
2,505,447	+		HSERO_RS11110	0.41	-0.6
2,505,447	-		HSERO_RS11110	0.41	-0.7
2,505,457	+		HSERO_RS11110	0.41	+0.6
2,505,470	-		HSERO_RS11110	0.42	-1.5
2,505,601	+		HSERO_RS11110	0.52	-0.0
2,505,614	-		HSERO_RS11110	0.53	-0.1
2,505,638	-		HSERO_RS11110	0.55	-0.2
2,505,650	+		HSERO_RS11110	0.56	+0.4
2,505,658	-		HSERO_RS11110	0.56	-0.1
2,505,885	-		HSERO_RS11110	0.73	+1.0
2,506,024	+		HSERO_RS11110	0.83	+0.0
2,506,032	-		HSERO_RS11110	0.84	-0.2
2,506,032	-		HSERO_RS11110	0.84	-0.6
2,506,032	-		HSERO_RS11110	0.84	+0.4
2,506,272	+				+0.3
2,506,667	-		HSERO_RS11115	0.29	+2.1
2,506,744	+		HSERO_RS11115	0.35	-0.2
2,506,943	+		HSERO_RS11115	0.50	+1.1
2,507,145	+		HSERO_RS11115	0.65	-0.4
2,507,291	-		HSERO_RS11115	0.77	-0.2
2,507,585	+				-0.4
2,507,663	-				-1.1
2,507,864	+				-0.5
2,507,963	+		HSERO_RS11120	0.18	+0.1
2,507,996	-		HSERO_RS11120	0.22	+0.3
2,508,020	-		HSERO_RS11120	0.24	-1.2
2,508,173	+		HSERO_RS11120	0.39	+0.1
2,508,272	+		HSERO_RS11120	0.49	+0.1
2,508,359	+		HSERO_RS11120	0.58	+1.0
2,508,530	-		HSERO_RS11120	0.75	-0.3