Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS10360

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,331,700	+		HSERO_RS10355	0.39	+1.6
2,332,189	-		HSERO_RS10355	0.84	+1.4
2,332,189	-		HSERO_RS10355	0.84	+1.5
2,332,189	-		HSERO_RS10355	0.84	+2.3
2,332,216	-		HSERO_RS10355	0.87	+1.5
2,332,315	-				+1.5
2,332,350	-				+1.3
2,332,524	+				+0.6
2,332,531	+				+1.3
2,332,532	-				-0.4
2,332,532	-				+0.0
2,332,626	+				+0.2
2,332,634	-				+0.7
2,332,634	-				+0.2
2,332,860	+				+1.5
2,332,899	+		HSERO_RS10360	0.10	+0.8
2,332,983	+		HSERO_RS10360	0.15	+0.4
2,333,012	+		HSERO_RS10360	0.16	+1.1
2,333,020	-		HSERO_RS10360	0.17	+1.3
2,333,149	-		HSERO_RS10360	0.23	+0.9
2,333,396	+		HSERO_RS10360	0.36	+0.6
2,333,780	-		HSERO_RS10360	0.55	+1.0
2,333,969	+				+2.4
2,333,969	+		HSERO_RS10360	0.65	+2.1
2,334,147	-		HSERO_RS10360	0.74	+1.8
2,334,170	-		HSERO_RS10360	0.75	+1.3
2,334,271	+				+3.2
2,334,279	-		HSERO_RS10360	0.80	+1.0
2,334,305	-		HSERO_RS10360	0.82	+0.7
2,334,578	-				+0.8