Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09480

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,155,995	-		HSERO_RS09475	0.63	+0.2
2,156,023	-		HSERO_RS09475	0.64	-0.9
2,156,147	+		HSERO_RS09475	0.70	-0.4
2,156,262	+		HSERO_RS09475	0.76	-0.7
2,156,316	-		HSERO_RS09475	0.79	-0.9
2,156,363	+		HSERO_RS09475	0.81	+0.0
2,156,376	-		HSERO_RS09475	0.82	+0.2
2,156,404	+		HSERO_RS09475	0.83	-0.3
2,156,483	-		HSERO_RS09475	0.87	-0.3
2,156,527	+		HSERO_RS09475	0.89	+1.2
2,156,807	+				+0.4
2,156,846	-				+0.3
2,157,011	+				+0.0
2,157,018	+				-0.7
2,157,348	+		HSERO_RS09480	0.33	+0.4
2,157,688	-		HSERO_RS09480	0.60	-0.3
2,157,849	+		HSERO_RS09480	0.73	+1.8
2,157,859	+		HSERO_RS09480	0.74	-0.4
2,157,952	+		HSERO_RS09480	0.81	+0.7
2,158,007	+		HSERO_RS09480	0.85	+0.1
2,158,190	-				-0.7
2,158,190	-				+0.2
2,158,233	+				+1.2
2,158,304	+		HSERO_RS09485	0.12	+0.4
2,158,400	-		HSERO_RS09485	0.27	+0.2
2,158,790	+		HSERO_RS09485	0.86	-0.4
2,158,916	+				-0.8
2,158,949	-				-0.1
2,159,088	+		HSERO_RS09490	0.43	-0.2
2,159,096	-		HSERO_RS09490	0.45	+0.1