Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09215

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,096,866	-		HSERO_RS09210	0.11	-0.1
2,096,866	-		HSERO_RS09210	0.11	-0.5
2,096,876	-		HSERO_RS09210	0.12	+0.0
2,097,010	+		HSERO_RS09210	0.25	-0.7
2,097,278	+		HSERO_RS09210	0.51	-0.1
2,097,286	-		HSERO_RS09210	0.52	-0.7
2,097,286	-		HSERO_RS09210	0.52	+1.0
2,097,286	-		HSERO_RS09210	0.52	-0.5
2,097,288	+		HSERO_RS09210	0.52	-0.3
2,097,288	+		HSERO_RS09210	0.52	-0.0
2,097,288	+		HSERO_RS09210	0.52	-0.9
2,097,296	-		HSERO_RS09210	0.53	-0.7
2,097,296	-		HSERO_RS09210	0.53	+0.7
2,097,298	+		HSERO_RS09210	0.53	-0.3
2,097,547	-				-0.6
2,097,659	-		HSERO_RS09210	0.89	-1.0
2,097,748	-				+0.0
2,097,856	+				+0.7
2,097,923	-		HSERO_RS09215	0.15	-0.3
2,097,945	-		HSERO_RS09215	0.17	+0.8
2,098,173	+		HSERO_RS09215	0.44	+2.3
2,098,527	-		HSERO_RS09215	0.86	+0.8
2,098,748	-				-0.1
2,098,795	-		HSERO_RS09220	0.11	-0.1
2,098,795	-		HSERO_RS09220	0.11	-1.0
2,099,321	+		HSERO_RS09225	0.24	+0.3
2,099,322	+		HSERO_RS09225	0.24	+0.3
2,099,329	-		HSERO_RS09225	0.26	+1.5
2,099,329	-				-1.1
2,099,390	-		HSERO_RS09225	0.39	+0.0
2,099,532	-		HSERO_RS09225	0.69	-0.2
2,099,532	-		HSERO_RS09225	0.69	+0.1
2,099,613	+		HSERO_RS09225	0.86	-0.0
2,099,632	-				-1.0