Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09090

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
2,057,299	+				-0.3
2,057,326	-				+0.6
2,057,327	-				+0.4
2,057,411	+				-0.3
2,057,411	+				-1.3
2,057,419	-				-0.2
2,057,419	-				-0.2
2,057,419	-				+0.5
2,057,419	-				+0.3
2,057,465	-				+0.8
2,057,995	+		HSERO_RS09085	0.67	+0.2
2,058,260	+				-0.7
2,058,335	+				+0.8
2,058,348	-				+0.2
2,058,576	-		HSERO_RS09090	0.54	+0.6
2,058,669	+		HSERO_RS09090	0.71	+0.3
2,058,669	+		HSERO_RS09090	0.71	+0.3
2,058,718	+		HSERO_RS09090	0.81	+0.9
2,058,778	-				+0.0
2,059,090	+		HSERO_RS09095	0.52	+0.5
2,059,117	-		HSERO_RS09095	0.57	+0.5
2,059,171	-		HSERO_RS09095	0.67	-0.2
2,059,279	+		HSERO_RS09095	0.88	+0.4
2,059,287	-				-0.3
2,059,374	-				+0.2
2,059,390	-				+0.5
2,059,394	-				+0.1
2,059,443	+				-0.1
2,059,443	+				+0.3
2,059,466	-				-1.7
2,059,577	-				+0.1
2,059,628	+				+0.3
2,059,643	+				+0.6
2,059,682	-				-1.4
2,059,720	+				-1.2
2,059,720	+				-0.9
2,059,720	+				+0.7