Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08340

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
1,899,176	-		HSERO_RS08335	0.25	+0.1
1,899,228	+		HSERO_RS08335	0.30	+0.1
1,899,507	-		HSERO_RS08335	0.55	+0.6
1,899,992	-				+0.1
1,900,352	+		HSERO_RS08340	0.40	+2.7
1,900,423	+		HSERO_RS08340	0.54	+0.5
1,900,473	-		HSERO_RS08340	0.64	+0.4
1,900,473	-		HSERO_RS08340	0.64	+0.4
1,900,580	+		HSERO_RS08340	0.84	-0.6
1,900,638	-				+0.2
1,900,651	+				+0.2
1,900,656	+				+0.2
1,901,040	+		HSERO_RS08345	0.26	-1.5
1,901,042	-		HSERO_RS08345	0.26	-0.9
1,901,230	-		HSERO_RS08345	0.43	-0.5
1,901,386	+		HSERO_RS08345	0.57	-0.4
1,901,429	+		HSERO_RS08345	0.61	-0.7
1,901,661	-		HSERO_RS08345	0.82	+0.1