Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08320

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
1,895,500	-		HSERO_RS08315	0.41	+0.2
1,895,503	+		HSERO_RS08315	0.41	-0.3
1,895,897	+		HSERO_RS08315	0.70	+0.5
1,895,905	-		HSERO_RS08315	0.70	+0.1
1,895,964	-		HSERO_RS08315	0.75	+1.5
1,896,000	-		HSERO_RS08315	0.77	+0.5
1,896,030	-		HSERO_RS08315	0.79	-1.1
1,896,079	+				+0.4
1,896,210	+				+1.2
1,896,237	-				+0.4
1,896,411	-				+0.0
1,896,419	+				-0.7
1,896,511	+				-0.1
1,896,558	+				+0.7
1,896,558	+				+1.9
1,896,606	-		HSERO_RS08320	0.15	+0.6
1,896,715	-		HSERO_RS08320	0.28	+0.7
1,896,726	+		HSERO_RS08320	0.30	+2.5
1,896,734	-		HSERO_RS08320	0.30	+2.6
1,896,810	-		HSERO_RS08320	0.40	+0.9
1,896,851	+		HSERO_RS08320	0.44	+0.3
1,896,983	-		HSERO_RS08320	0.60	+0.7
1,896,993	+		HSERO_RS08320	0.61	-0.6
1,897,331	-				+0.1
1,897,471	-				+1.4
1,897,528	-				+0.5
1,897,609	-		HSERO_RS08325	0.19	+0.2
1,897,638	+		HSERO_RS08325	0.23	+0.8
1,897,638	+		HSERO_RS08325	0.23	+0.5
1,897,638	+		HSERO_RS08325	0.23	+0.2
1,897,668	-		HSERO_RS08325	0.26	-0.6
1,897,707	+		HSERO_RS08325	0.31	+0.6
1,897,715	-		HSERO_RS08325	0.32	+0.4
1,897,815	-		HSERO_RS08325	0.45	-0.4
1,897,905	+		HSERO_RS08325	0.57	+0.4
1,897,945	+		HSERO_RS08325	0.62	-0.3
1,897,984	+		HSERO_RS08325	0.67	-0.6
1,898,250	+				+0.5