Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06830

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
1,551,329	+				-0.2
1,551,425	+		HSERO_RS06825	0.20	-0.7
1,551,428	+		HSERO_RS06825	0.20	-1.4
1,551,568	-		HSERO_RS06825	0.43	+0.3
1,551,568	-		HSERO_RS06825	0.43	+0.4
1,551,578	+		HSERO_RS06825	0.45	+0.6
1,551,838	-		HSERO_RS06825	0.87	-0.3
1,551,924	+				-0.2
1,552,252	+				-0.0
1,552,252	+				-0.5
1,552,276	-				+1.0
1,552,418	-				+0.0
1,552,489	-				+0.3
1,552,758	+		HSERO_RS06830	0.25	-0.1
1,552,914	-		HSERO_RS06830	0.34	-0.0
1,552,941	+		HSERO_RS06830	0.36	-0.0
1,552,983	+		HSERO_RS06830	0.38	+0.3
1,553,002	-		HSERO_RS06830	0.39	-1.7
1,553,107	-		HSERO_RS06830	0.45	+1.4
1,553,138	+		HSERO_RS06830	0.47	+0.1
1,553,186	+		HSERO_RS06830	0.50	+1.6
1,553,285	+		HSERO_RS06830	0.56	+0.2
1,553,662	-		HSERO_RS06830	0.77	+1.4
1,553,711	-		HSERO_RS06830	0.80	+0.6
1,553,724	-		HSERO_RS06830	0.81	-0.0
1,553,724	-		HSERO_RS06830	0.81	+0.0
1,553,802	+		HSERO_RS06830	0.86	+1.0
1,553,924	-				+0.7
1,553,948	-				-0.8
1,554,044	+				-0.1
1,554,044	+				+0.1
1,554,101	+				+0.3
1,554,109	-				+0.4
1,554,114	+				+1.2
1,554,136	+				+0.1
1,554,214	+				-0.4
1,554,259	+		HSERO_RS06835	0.14	-0.5
1,554,334	+		HSERO_RS06835	0.22	-1.2
1,554,528	-		HSERO_RS06835	0.41	-0.9
1,554,548	-		HSERO_RS06835	0.43	-0.3
1,554,615	-		HSERO_RS06835	0.50	+0.4
1,554,692	+		HSERO_RS06835	0.58	+0.2
1,554,753	-		HSERO_RS06835	0.64	-0.2
1,554,855	+		HSERO_RS06835	0.74	-0.2
1,554,906	+		HSERO_RS06835	0.79	-0.0
1,554,914	-		HSERO_RS06835	0.80	-0.0
1,554,916	+		HSERO_RS06835	0.80	-0.3
1,554,916	+		HSERO_RS06835	0.80	+0.6
1,554,926	+		HSERO_RS06835	0.81	+0.5
1,554,928	+		HSERO_RS06835	0.81	+0.5
1,554,980	+		HSERO_RS06835	0.87	+0.3
1,554,985	+		HSERO_RS06835	0.87	+0.9
1,554,988	-		HSERO_RS06835	0.88	+0.0
1,555,033	+				-0.0
1,555,041	-				-0.1