Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06005

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
1,358,074	-		HSERO_RS05995	0.27	+0.6
1,358,074	-		HSERO_RS05995	0.27	-1.0
1,358,083	+		HSERO_RS05995	0.29	-0.4
1,358,120	+		HSERO_RS05995	0.35	+0.0
1,358,161	-		HSERO_RS05995	0.43	-0.4
1,358,182	+		HSERO_RS05995	0.47	-0.7
1,358,236	-		HSERO_RS05995	0.56	+0.6
1,358,275	+		HSERO_RS05995	0.63	+1.1
1,358,275	+		HSERO_RS05995	0.63	+0.2
1,358,283	-		HSERO_RS05995	0.65	-0.6
1,358,470	+				-0.2
1,358,499	+				-0.3
1,358,530	+				+0.1
1,358,690	-		HSERO_RS06000	0.67	-0.6
1,358,890	-				-0.2
1,358,903	-				-1.0
1,358,950	-				-1.4
1,359,021	-		HSERO_RS06005	0.26	+0.9
1,359,046	+		HSERO_RS06005	0.32	-0.2
1,359,054	-		HSERO_RS06005	0.34	+1.2
1,359,201	-		HSERO_RS06005	0.73	+0.4
1,359,260	+		HSERO_RS06005	0.89	-0.2
1,359,268	-				-0.4
1,359,291	-				-0.1
1,359,370	+				-0.6
1,359,390	+				-0.4
1,359,452	+		HSERO_RS06010	0.17	-0.2
1,359,478	+		HSERO_RS06010	0.25	-0.3
1,359,539	+		HSERO_RS06010	0.43	-0.7
1,359,607	+		HSERO_RS06010	0.64	-0.2
1,359,617	+		HSERO_RS06010	0.67	-2.0
1,359,836	+				-1.3
1,359,844	-				+0.0
1,359,844	-				+0.3
1,359,844	-				-3.1
1,359,872	-				+0.5
1,359,880	+				+0.1
1,359,930	-				+0.4
1,359,951	-				+0.1
1,359,973	+				-0.2
1,360,020	-				-0.8
1,360,060	+				+0.1
1,360,100	+				+0.4
1,360,263	-				+0.8