Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04970

Experiment: Dictyostellum sp.mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-1
1,093,542	-				-2.3
1,093,549	-				+0.1
1,093,645	-				-0.1
1,093,687	-				-1.0
1,093,707	-				-0.8
1,094,053	-		HSERO_RS04970	0.47	+1.5
1,094,276	+		HSERO_RS04970	0.75	-0.1
1,094,418	-				+0.2
1,094,441	-				+0.7
1,094,477	-				-0.6
1,094,538	+				-0.5
1,094,622	-		HSERO_RS04975	0.13	-0.4
1,094,814	+		HSERO_RS04975	0.42	-0.7
1,094,837	-		HSERO_RS04975	0.45	+0.2
1,094,903	+		HSERO_RS04975	0.56	-0.3
1,095,077	+		HSERO_RS04975	0.82	-0.6
1,095,077	+		HSERO_RS04975	0.82	+0.6
1,095,253	-				+1.1