Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04255 and HSERO_RS04260 are separated by 105 nucleotides HSERO_RS04260 and HSERO_RS04265 are separated by 9 nucleotides HSERO_RS04265 and HSERO_RS04270 are separated by 78 nucleotides HSERO_RS04270 and HSERO_RS04275 are separated by 31 nucleotides
HSERO_RS04255: HSERO_RS04255 - hypothetical protein, at 935,625 to 936,275
_RS04255
HSERO_RS04260: HSERO_RS04260 - cysteine methyltransferase, at 936,381 to 936,884
_RS04260
HSERO_RS04265: HSERO_RS04265 - tyrosine recombinase XerD, at 936,894 to 937,817
_RS04265
HSERO_RS04270: HSERO_RS04270 - membrane protein, at 937,896 to 938,396
_RS04270
HSERO_RS04275: HSERO_RS04275 - glycerol-3-phosphate acyltransferase, at 938,428 to 939,045
_RS04275
Position (kb) 936
937
938 Strain fitness (log2 ratio) -1
0
1 at 935.896 kb on + strand, within HSERO_RS04255 at 935.909 kb on - strand, within HSERO_RS04255 at 936.035 kb on + strand, within HSERO_RS04255 at 936.074 kb on + strand, within HSERO_RS04255 at 936.097 kb on - strand, within HSERO_RS04255 at 936.196 kb on + strand, within HSERO_RS04255 at 936.196 kb on + strand, within HSERO_RS04255 at 936.204 kb on - strand, within HSERO_RS04255 at 936.271 kb on + strand at 936.346 kb on - strand at 936.476 kb on + strand, within HSERO_RS04260 at 936.546 kb on + strand, within HSERO_RS04260 at 936.571 kb on - strand at 936.677 kb on - strand, within HSERO_RS04260 at 936.751 kb on - strand, within HSERO_RS04260 at 937.055 kb on + strand, within HSERO_RS04265 at 937.847 kb on + strand at 937.851 kb on + strand at 937.851 kb on + strand at 937.936 kb on + strand at 937.965 kb on - strand, within HSERO_RS04270 at 938.029 kb on + strand, within HSERO_RS04270 at 938.257 kb on - strand, within HSERO_RS04270 at 938.390 kb on + strand at 938.390 kb on + strand at 938.395 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 935,896 + HSERO_RS04255 0.42 -0.4 935,909 - HSERO_RS04255 0.44 -0.3 936,035 + HSERO_RS04255 0.63 -0.2 936,074 + HSERO_RS04255 0.69 +0.0 936,097 - HSERO_RS04255 0.73 +0.4 936,196 + HSERO_RS04255 0.88 -0.0 936,196 + HSERO_RS04255 0.88 -0.0 936,204 - HSERO_RS04255 0.89 -0.3 936,271 + +0.5 936,346 - +0.3 936,476 + HSERO_RS04260 0.19 +0.1 936,546 + HSERO_RS04260 0.33 -0.3 936,571 - -0.3 936,677 - HSERO_RS04260 0.59 +0.0 936,751 - HSERO_RS04260 0.73 +0.5 937,055 + HSERO_RS04265 0.17 +0.6 937,847 + +0.3 937,851 + -0.9 937,851 + -0.2 937,936 + -0.3 937,965 - HSERO_RS04270 0.14 +1.1 938,029 + HSERO_RS04270 0.27 +0.4 938,257 - HSERO_RS04270 0.72 +0.3 938,390 + +0.1 938,390 + +0.0 938,395 + -0.0
Or see this region's nucleotide sequence