Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04225 and HSERO_RS04230 are separated by 15 nucleotides HSERO_RS04230 and HSERO_RS04235 are separated by 53 nucleotides HSERO_RS04235 and HSERO_RS04240 are separated by 482 nucleotides
HSERO_RS04225: HSERO_RS04225 - permease, at 928,103 to 928,993
_RS04225
HSERO_RS04230: HSERO_RS04230 - LuxR family transcriptional regulator, at 929,009 to 929,599
_RS04230
HSERO_RS04235: HSERO_RS04235 - C4-dicarboxylate ABC transporter, at 929,653 to 931,677
_RS04235
HSERO_RS04240: HSERO_RS04240 - C4-dicarboxylate ABC transporter, at 932,160 to 933,164
_RS04240
Position (kb) 929
930
931
932 Strain fitness (log2 ratio) -2
-1
0
1
2 at 928.666 kb on - strand, within HSERO_RS04225 at 928.720 kb on - strand, within HSERO_RS04225 at 928.733 kb on - strand, within HSERO_RS04225 at 928.801 kb on - strand, within HSERO_RS04225 at 928.835 kb on - strand, within HSERO_RS04225 at 928.918 kb on + strand at 928.937 kb on - strand at 929.192 kb on + strand, within HSERO_RS04230 at 929.207 kb on - strand, within HSERO_RS04230 at 929.330 kb on - strand, within HSERO_RS04230 at 929.596 kb on + strand at 929.725 kb on - strand at 930.008 kb on - strand at 930.090 kb on + strand, within HSERO_RS04235 at 930.188 kb on + strand, within HSERO_RS04235 at 930.278 kb on - strand, within HSERO_RS04235 at 930.281 kb on - strand, within HSERO_RS04235 at 930.510 kb on - strand at 930.538 kb on - strand, within HSERO_RS04235 at 930.564 kb on - strand, within HSERO_RS04235 at 930.574 kb on - strand, within HSERO_RS04235 at 930.620 kb on + strand, within HSERO_RS04235 at 930.835 kb on - strand, within HSERO_RS04235 at 930.845 kb on - strand, within HSERO_RS04235 at 930.877 kb on + strand, within HSERO_RS04235 at 930.980 kb on - strand, within HSERO_RS04235 at 931.038 kb on - strand, within HSERO_RS04235 at 931.039 kb on + strand, within HSERO_RS04235 at 931.094 kb on - strand, within HSERO_RS04235 at 931.137 kb on - strand, within HSERO_RS04235 at 931.184 kb on + strand, within HSERO_RS04235 at 931.634 kb on + strand at 931.688 kb on + strand at 931.750 kb on + strand at 931.758 kb on - strand at 931.815 kb on + strand at 931.815 kb on + strand at 931.823 kb on - strand at 932.279 kb on + strand, within HSERO_RS04240 at 932.392 kb on + strand, within HSERO_RS04240 at 932.513 kb on - strand, within HSERO_RS04240
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 928,666 - HSERO_RS04225 0.63 -0.0 928,720 - HSERO_RS04225 0.69 +0.4 928,733 - HSERO_RS04225 0.71 +0.3 928,801 - HSERO_RS04225 0.78 +0.8 928,835 - HSERO_RS04225 0.82 -0.2 928,918 + +0.0 928,937 - +0.8 929,192 + HSERO_RS04230 0.31 +0.2 929,207 - HSERO_RS04230 0.34 +1.7 929,330 - HSERO_RS04230 0.54 -0.4 929,596 + +0.7 929,725 - +0.6 930,008 - +0.5 930,090 + HSERO_RS04235 0.22 -2.1 930,188 + HSERO_RS04235 0.26 -1.0 930,278 - HSERO_RS04235 0.31 +0.4 930,281 - HSERO_RS04235 0.31 +0.8 930,510 - -0.3 930,538 - HSERO_RS04235 0.44 +0.8 930,564 - HSERO_RS04235 0.45 +0.9 930,574 - HSERO_RS04235 0.45 +1.1 930,620 + HSERO_RS04235 0.48 -0.8 930,835 - HSERO_RS04235 0.58 +2.4 930,845 - HSERO_RS04235 0.59 +0.2 930,877 + HSERO_RS04235 0.60 +0.4 930,980 - HSERO_RS04235 0.66 +0.2 931,038 - HSERO_RS04235 0.68 +0.1 931,039 + HSERO_RS04235 0.68 +0.7 931,094 - HSERO_RS04235 0.71 +0.9 931,137 - HSERO_RS04235 0.73 +1.0 931,184 + HSERO_RS04235 0.76 +1.2 931,634 + +0.3 931,688 + +1.4 931,750 + -0.1 931,758 - +0.0 931,815 + -0.1 931,815 + -0.3 931,823 - +0.1 932,279 + HSERO_RS04240 0.12 -0.4 932,392 + HSERO_RS04240 0.23 -0.2 932,513 - HSERO_RS04240 0.35 -0.6
Or see this region's nucleotide sequence