Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04210 and HSERO_RS04215 overlap by 37 nucleotides HSERO_RS04215 and HSERO_RS04220 are separated by 67 nucleotides HSERO_RS04220 and HSERO_RS04225 are separated by 12 nucleotides HSERO_RS04225 and HSERO_RS04230 are separated by 15 nucleotides
HSERO_RS04210: HSERO_RS04210 - N-acetylmuramoyl-L-alanine amidase, at 925,067 to 926,428
_RS04210
HSERO_RS04215: HSERO_RS04215 - hydrolase, at 926,392 to 926,877
_RS04215
HSERO_RS04220: HSERO_RS04220 - epoxyqueuosine reductase, at 926,945 to 928,090
_RS04220
HSERO_RS04225: HSERO_RS04225 - permease, at 928,103 to 928,993
_RS04225
HSERO_RS04230: HSERO_RS04230 - LuxR family transcriptional regulator, at 929,009 to 929,599
_RS04230
Position (kb) 926
927
928
929 Strain fitness (log2 ratio) -1
0
1 at 927.125 kb on + strand, within HSERO_RS04220 at 927.125 kb on + strand, within HSERO_RS04220 at 928.032 kb on + strand at 928.119 kb on + strand at 928.191 kb on - strand at 928.444 kb on + strand, within HSERO_RS04225 at 928.489 kb on + strand, within HSERO_RS04225 at 928.666 kb on - strand, within HSERO_RS04225 at 928.720 kb on - strand, within HSERO_RS04225 at 928.733 kb on - strand, within HSERO_RS04225 at 928.801 kb on - strand, within HSERO_RS04225 at 928.835 kb on - strand, within HSERO_RS04225 at 928.918 kb on + strand at 928.937 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 927,125 + HSERO_RS04220 0.16 +0.9 927,125 + HSERO_RS04220 0.16 +0.4 928,032 + +0.3 928,119 + +0.2 928,191 - +0.4 928,444 + HSERO_RS04225 0.38 +0.0 928,489 + HSERO_RS04225 0.43 -1.6 928,666 - HSERO_RS04225 0.63 -0.0 928,720 - HSERO_RS04225 0.69 +0.4 928,733 - HSERO_RS04225 0.71 +0.3 928,801 - HSERO_RS04225 0.78 +0.8 928,835 - HSERO_RS04225 0.82 -0.2 928,918 + +0.0 928,937 - +0.8
Or see this region's nucleotide sequence