Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03130 and HSERO_RS03135 overlap by 14 nucleotides HSERO_RS03135 and HSERO_RS03140 are separated by 48 nucleotides HSERO_RS03140 and HSERO_RS03145 are separated by 10 nucleotides
HSERO_RS03130: HSERO_RS03130 - chemotaxis protein CheY, at 685,077 to 686,222
_RS03130
HSERO_RS03135: HSERO_RS03135 - diguanylate cyclase, at 686,209 to 687,471
_RS03135
HSERO_RS03140: HSERO_RS03140 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 687,520 to 688,005
_RS03140
HSERO_RS03145: HSERO_RS03145 - poly(A) polymerase, at 688,016 to 689,620
_RS03145
Position (kb) 686
687
688 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 685.378 kb on + strand, within HSERO_RS03130 at 685.379 kb on - strand, within HSERO_RS03130 at 685.476 kb on + strand, within HSERO_RS03130 at 685.527 kb on - strand, within HSERO_RS03130 at 685.540 kb on + strand, within HSERO_RS03130 at 685.557 kb on + strand, within HSERO_RS03130 at 685.635 kb on - strand, within HSERO_RS03130 at 685.728 kb on - strand, within HSERO_RS03130 at 685.738 kb on - strand, within HSERO_RS03130 at 685.760 kb on - strand, within HSERO_RS03130 at 685.772 kb on - strand, within HSERO_RS03130 at 686.132 kb on + strand at 686.188 kb on + strand at 686.213 kb on - strand at 686.224 kb on - strand at 686.235 kb on + strand at 686.861 kb on + strand, within HSERO_RS03135 at 686.861 kb on + strand, within HSERO_RS03135 at 686.865 kb on + strand, within HSERO_RS03135 at 687.077 kb on - strand, within HSERO_RS03135 at 687.106 kb on - strand, within HSERO_RS03135 at 687.131 kb on + strand, within HSERO_RS03135 at 687.182 kb on - strand, within HSERO_RS03135 at 687.346 kb on - strand at 687.396 kb on + strand at 687.477 kb on + strand at 687.487 kb on - strand at 688.021 kb on - strand at 688.145 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 685,378 + HSERO_RS03130 0.26 -0.9 685,379 - HSERO_RS03130 0.26 -0.6 685,476 + HSERO_RS03130 0.35 -0.2 685,527 - HSERO_RS03130 0.39 +0.4 685,540 + HSERO_RS03130 0.40 -1.4 685,557 + HSERO_RS03130 0.42 +0.7 685,635 - HSERO_RS03130 0.49 +0.1 685,728 - HSERO_RS03130 0.57 +0.6 685,738 - HSERO_RS03130 0.58 +0.5 685,760 - HSERO_RS03130 0.60 +0.8 685,772 - HSERO_RS03130 0.61 -0.1 686,132 + +0.4 686,188 + +1.5 686,213 - -0.5 686,224 - +0.5 686,235 + +1.4 686,861 + HSERO_RS03135 0.52 +1.6 686,861 + HSERO_RS03135 0.52 +0.9 686,865 + HSERO_RS03135 0.52 +0.9 687,077 - HSERO_RS03135 0.69 +1.6 687,106 - HSERO_RS03135 0.71 +4.2 687,131 + HSERO_RS03135 0.73 +0.5 687,182 - HSERO_RS03135 0.77 +0.3 687,346 - +0.4 687,396 + +0.8 687,477 + +0.6 687,487 - +0.1 688,021 - -0.9 688,145 + +0.3
Or see this region's nucleotide sequence